Gene detail

Detail information of GWHGAAZE013534

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	NP_001275235.1	3.0728E-105	uncharacterized protein LOC102577830 [Solanum tuberosum]
Swissprot	tr\|Q9FLF0\|RS92_ARATH	9E-96	40S ribosomal protein S9-2
trEMBL	tr\|Q3HRY4\|Q3HRY4_SOLTU	1E-105	Putative uncharacterized protein {ECO:0000313\|EMBL:ABA46767.1}
TAIR10	AT5G39850.1	2E-73	Ribosomal protein S4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103929445	103933011	+
GWHAAZE00000003	mRNA	103929445	103933011	+
GWHAAZE00000003	exon	103929445	103929454	+
GWHAAZE00000003	exon	103930443	103930824	+
GWHAAZE00000003	exon	103931540	103931688	+
GWHAAZE00000003	exon	103932827	103933011	+
GWHAAZE00000003	CDS	103929445	103929454	+
GWHAAZE00000003	CDS	103930443	103930824	+
GWHAAZE00000003	CDS	103931540	103931688	+
GWHAAZE00000003	CDS	103932827	103933011	+

Transcript Sequence
>GWHTAAZE013548 ATGTCAATAGATGGGAAGACTTTTAAGAAGCCTCGTCGTCCTTACAAGAAGGAGCGATTGGATGCTGAGCCGAAGCTTGTGGGGGAGTATGGGCTTAGGTGCAAGAGGGAGCTTTGGAGGGTTCAGTATGCTCTCAGCCGCATTCGTAATGCAGCAAGAATGCTGCTGACCCTTGATGAGAAGGACCCGCGTAGGATTTTTGAGGGTGAAGCCCTTCTCAGGAGGATGAACAGGTATGGCTTGTTGGATGAAAGCCAGAACAAGCTTGATTATGTGCTGGCCCTCACTGTGGAAAACTTTCTTGAGCGACATCTTCAAACACTTGTCTTCAAGACGGGCATGGCTAAGTCAATTCATCATGCTAGGGTGCTTATTAGGCAGAGGCATATCAGCACTTTTGACATGCATGCTGCTTTTTATGTCCAAGCCGTCTCCTACTTGTACAATTGCCCAAATATGTTTGATACTAGTAATTCTCCTCTGAGAATTGTTCGTACCTCCTGGACGAAGATGCATGTGTCTATTGAACTTGCTTTACATGGGTCGGGAGGCAGGTGGTCAATGTTCCATCCTTCATGGTTAGGGGACTCCCAAAAGCATATAGATTTCTCTCTAACTAGTCCCTTTGGTGGTGGTCGTCCTGGCAGAGTGAAGCGAAGGAACCAGAAGGCTGCTGCAAAGAAGGCTGCCGGTGGTGGAGATGGGGACGAAGAAGATGAAGAATGA

Network for GWHGAAZE013534

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00163.20	Ribosomal_S4	9	58	1.70E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02997	RP-S9e, RPS9	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015935	cellular_component	small ribosomal subunit
GO:0019843	molecular_function	rRNA binding
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	8.660
	SRR3591706	second leaf	8.171
	SRR3591707	mature leaf	6.789
	SRR3591708	Shoot apex	20.584
	SRR3591709	Stem	6.925
	SRR3591710	White floral bud	15.313
	SRR3591711	White flower	15.979
	SRR3591712	Green floral bud	10.823
	SRR3591713	Yellow flower	23.570
SRP173429	SRR8316895	Juvenile bud stage	7.162
	SRR8316896	Juvenile bud stage	9.673
	SRR8316897	Juvenile bud stage	3.059
	SRR8316894	Third green stage	5.818
	SRR8316900	Third green stage	20.439
	SRR8316901	Third green stage	17.088
	SRR8316898	Complete white stage	38.341
	SRR8316899	Complete white stage	15.768
	SRR8316903	Complete white stage	54.352
	SRR8316902	Silver flowering stage	60.887
	SRR8316904	Silver flowering stage	67.919
	SRR8316905	Silver flowering stage	44.714
	SRR8316906	Gold flowering stage	140.537
	SRR8316907	Gold flowering stage	144.282
	SRR8316908	Gold flowering stage	130.976
SRP132670	SRR6706286	Control	18.333
	SRR6706287	Light intensity 50%	21.010
	SRR6706288	Light intensity 20%	23.937
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.609
	CNS0095593	Slightly white alabastrum(diploid) 2	13.961
	CNS0095594	Slightly white alabastrum(diploid) 3	11.391
	CNS0095595	Whole white alabastrum(diploid) 2	14.566
	CNS0095596	Whole white alabastrum(diploid) 3	12.228
	CNS0095597	Whole white alabastrum(diploid) 4	10.368
	CNS0095598	Silvery flower (diploied) 1	44.944
	CNS0095599	Silvery flower (diploied) 2	47.101
	CNS0095600	Silvery flower (diploied) 3	79.777
	CNS0095601	Golden flower (diploid) 1	41.409
	CNS0095602	Golden flower (diploid) 2	55.776
	CNS0095603	Golden flower (diploid) 3	58.788
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.453
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.565
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.927
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.225
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.991
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.751
	CNS0095610	Silvery flower (tetraploid) 1	141.849
	CNS0095611	Silvery flower (tetraploid) 2	120.674
	CNS0095612	Silvery flower (tetraploid) 3	174.043
	CNS0095613	Golden flower (tetraploid) 1	170.554
	CNS0095614	Golden flower (tetraploid) 2	113.010
	CNS0095615	Golden flower (tetraploid) 3	109.359
CRA001975	CRR073297	Stem 1	11.787
	CRR073298	Stem 2	14.806
	CRR073299	Stem 3	6.040
	CRR073300	Leaf 1	11.126
	CRR073301	Leaf 2	15.250
	CRR073302	Leaf 3	7.880
	CRR073303	Juvenile bud 1	5.140
	CRR073304	Juvenile bud 2	9.509
	CRR073305	Juvenile bud 3	3.300
	CRR073306	Third green 1	39.733
	CRR073307	Third green 2	31.064
	CRR073308	Third green 3	27.312
	CRR073309	Second white 1	43.521
	CRR073310	Second white 2	50.196
	CRR073311	Second white 3	38.602
	CRR073312	Silver flowering 1	47.086
	CRR073313	Silver flowering 2	29.638
	CRR073314	Silver flowering 3	35.594
	CRR073315	Gold flowering 1	2.586
	CRR073316	Gold flowering 2	2.221
	CRR073317	Gold flowering 3	0.359
	CRR073318	Tawny withering 1	3.111
	CRR073319	Tawny withering 2	2.552
	CRR073320	Tawny withering 3	1.866