Gene detail

Detail information of GWHGAAZE013525

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009596164.1	4.1595E-164	PREDICTED: origin recognition complex subunit 6 [Nicotiana tomentosiformis]
Swissprot	tr\|Q9ZVH3\|ORC6_ARATH	2E-129	Origin of replication complex subunit 6 {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|A0A067L1V9\|A0A067L1V9_JATCU	3E-162	Uncharacterized protein {ECO:0000313\|EMBL:KDP41188.1}
TAIR10	AT1G26840.1	5E-88	origin recognition complex protein 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103830198	103832716	-
GWHAAZE00000003	mRNA	103830198	103832716	-
GWHAAZE00000003	exon	103832549	103832716	-
GWHAAZE00000003	exon	103832388	103832434	-
GWHAAZE00000003	exon	103832179	103832283	-
GWHAAZE00000003	exon	103832003	103832083	-
GWHAAZE00000003	exon	103831615	103831726	-
GWHAAZE00000003	exon	103831387	103831449	-
GWHAAZE00000003	exon	103831197	103831284	-
GWHAAZE00000003	exon	103831009	103831079	-
GWHAAZE00000003	exon	103830369	103830465	-
GWHAAZE00000003	exon	103830198	103830274	-
GWHAAZE00000003	CDS	103832549	103832716	-
GWHAAZE00000003	CDS	103832388	103832434	-
GWHAAZE00000003	CDS	103832179	103832283	-
GWHAAZE00000003	CDS	103832003	103832083	-
GWHAAZE00000003	CDS	103831615	103831726	-
GWHAAZE00000003	CDS	103831387	103831449	-
GWHAAZE00000003	CDS	103831197	103831284	-
GWHAAZE00000003	CDS	103831009	103831079	-
GWHAAZE00000003	CDS	103830369	103830465	-
GWHAAZE00000003	CDS	103830198	103830274	-

Transcript Sequence
>GWHTAAZE013539 ATGCACAGAATCGGAAGCCACTACTCTATACCTCTCAATTCATCAACAATGGACCTATCTGAGTTAGCCAAGAAGCTAGGGCTTTCTGAATCAAAACACCTGATCCGTAGAGCCGCCGAGCTCCGTCGCCTCTCCGACATTCAATTCAACTCTTCCATTATCGGAGTTGGAGAGATTTGCAAGGCTATCATCTGCTTAGAGATTGCTGCTACTAGGGCGGATGTTTTATTTGATCGTCAGAGAGCGATTAAGTTGAGCGGAATGTCTGAAAAGGCTTACATCAGATCTTTCAATGCTATGCAAAATGGAATTGGTGTTAAGAACAAGCTGGATATTAGAGAATTGGGGATTCAATTCGGATGTATTAGGCTCATCCCTTTGGTTCAGAAGGGCTTATCTCTATACAGGGATAGGTTTCTTGCATCATTACCAGCTTCCCGTCGTGCATCAGCTGATTTCAGTCGGCCTGTTTTTACTGCTGTGGCATTCTACTTGTGCGCCAAAAGACATAAGCTCAAAGTTGACAAGAATAAGATAATCGAACTTTCGGGCACGTCAGAATCTGAATTTTCTAGTGTGTCTACCTCCATGAAAGACCTTTGCCATGATGTCTTTGGGATATCAAAAGAAAAGAAAGATCCGAAAAATGTGAAGTCAAATCGAGACCTGTTAGATGCATTACCTGAAAAAAGGCGGGCCGAGGACGGTGGATATTCATCTGATGAGGGAAAGGAGCTTTCATCCTACAAAAAGCGTAAATGCATGGAGAAACACGATTATGAAGAATGGAAATCAACTGTTATTAAATCAAATAGCAACAGCAAGGCAAAAGCTCCTGCCAAGCGGACCAAGCAAGCTCGACTCAACTTTTTTAAGGATGTTCCAGAAACTGAAGTGGAGGCTATGTGA

Network for GWHGAAZE013525

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05460.14	ORC6	19	259	1.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02608	ORC6	Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113

Gene Ontology

GO term	Ontology	Name
GO:0006260	biological_process	DNA replication
GO:0005664	cellular_component	nuclear origin of replication recognition complex
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.118
	SRR3591706	second leaf	1.813
	SRR3591707	mature leaf	0.206
	SRR3591708	Shoot apex	12.146
	SRR3591709	Stem	2.136
	SRR3591710	White floral bud	0.678
	SRR3591711	White flower	0.534
	SRR3591712	Green floral bud	1.479
	SRR3591713	Yellow flower	0.102
SRP173429	SRR8316895	Juvenile bud stage	2.827
	SRR8316896	Juvenile bud stage	1.884
	SRR8316897	Juvenile bud stage	1.369
	SRR8316894	Third green stage	0.518
	SRR8316900	Third green stage	1.684
	SRR8316901	Third green stage	1.137
	SRR8316898	Complete white stage	0.057
	SRR8316899	Complete white stage	1.965
	SRR8316903	Complete white stage	0.319
	SRR8316902	Silver flowering stage	0.268
	SRR8316904	Silver flowering stage	0.669
	SRR8316905	Silver flowering stage	0.071
	SRR8316906	Gold flowering stage	0.652
	SRR8316907	Gold flowering stage	0.104
	SRR8316908	Gold flowering stage	0.904
SRP132670	SRR6706286	Control	1.517
	SRR6706287	Light intensity 50%	1.807
	SRR6706288	Light intensity 20%	2.657
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.615
	CNS0095593	Slightly white alabastrum(diploid) 2	1.687
	CNS0095594	Slightly white alabastrum(diploid) 3	0.812
	CNS0095595	Whole white alabastrum(diploid) 2	1.167
	CNS0095596	Whole white alabastrum(diploid) 3	1.143
	CNS0095597	Whole white alabastrum(diploid) 4	0.866
	CNS0095598	Silvery flower (diploied) 1	1.322
	CNS0095599	Silvery flower (diploied) 2	1.342
	CNS0095600	Silvery flower (diploied) 3	0.484
	CNS0095601	Golden flower (diploid) 1	0.216
	CNS0095602	Golden flower (diploid) 2	0.364
	CNS0095603	Golden flower (diploid) 3	0.366
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.823
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.073
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.680
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.621
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.648
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.006
	CNS0095610	Silvery flower (tetraploid) 1	0.892
	CNS0095611	Silvery flower (tetraploid) 2	0.638
	CNS0095612	Silvery flower (tetraploid) 3	0.486
	CNS0095613	Golden flower (tetraploid) 1	0.600
	CNS0095614	Golden flower (tetraploid) 2	0.906
	CNS0095615	Golden flower (tetraploid) 3	0.263
CRA001975	CRR073297	Stem 1	3.911
	CRR073298	Stem 2	2.508
	CRR073299	Stem 3	2.608
	CRR073300	Leaf 1	0.954
	CRR073301	Leaf 2	0.998
	CRR073302	Leaf 3	0.440
	CRR073303	Juvenile bud 1	1.199
	CRR073304	Juvenile bud 2	0.211
	CRR073305	Juvenile bud 3	1.104
	CRR073306	Third green 1	0.198
	CRR073307	Third green 2	0.088
	CRR073308	Third green 3	0.377
	CRR073309	Second white 1	0.044
	CRR073310	Second white 2	0.120
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.454
	CRR073313	Silver flowering 2	0.049
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.267
	CRR073316	Gold flowering 2	1.657
	CRR073317	Gold flowering 3	0.685
	CRR073318	Tawny withering 1	2.703
	CRR073319	Tawny withering 2	1.992
	CRR073320	Tawny withering 3	3.081