Gene detail

Detail information of GWHGAAZE013502

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002271443.2	PREDICTED: anaphase-promoting complex subunit 2 [Vitis vinifera]
Swissprot	tr\|Q8H1U5\|APC2_ARATH	Anaphase-promoting complex subunit 2
trEMBL	tr\|D7TN60\|D7TN60_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI31933.3}
TAIR10	AT2G04660.1	anaphase-promoting complex/cyclosome 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103524448	103532682	+
GWHAAZE00000003	mRNA	103524448	103532682	+
GWHAAZE00000003	exon	103524448	103524791	+
GWHAAZE00000003	exon	103525547	103525633	+
GWHAAZE00000003	exon	103525882	103526167	+
GWHAAZE00000003	exon	103526338	103526633	+
GWHAAZE00000003	exon	103526942	103527013	+
GWHAAZE00000003	exon	103527147	103527391	+
GWHAAZE00000003	exon	103528219	103528635	+
GWHAAZE00000003	exon	103528975	103529176	+
GWHAAZE00000003	exon	103529276	103529390	+
GWHAAZE00000003	exon	103530177	103530292	+
GWHAAZE00000003	exon	103530843	103531012	+
GWHAAZE00000003	exon	103531256	103531337	+
GWHAAZE00000003	exon	103531577	103531765	+
GWHAAZE00000003	exon	103532402	103532470	+
GWHAAZE00000003	exon	103532560	103532682	+
GWHAAZE00000003	five_prime_UTR	103524448	103524557	+
GWHAAZE00000003	CDS	103524558	103524791	+
GWHAAZE00000003	CDS	103525547	103525633	+
GWHAAZE00000003	CDS	103525882	103526167	+
GWHAAZE00000003	CDS	103526338	103526633	+
GWHAAZE00000003	CDS	103526942	103527013	+
GWHAAZE00000003	CDS	103527147	103527391	+
GWHAAZE00000003	CDS	103528219	103528635	+
GWHAAZE00000003	CDS	103528975	103529176	+
GWHAAZE00000003	CDS	103529276	103529390	+
GWHAAZE00000003	CDS	103530177	103530292	+
GWHAAZE00000003	CDS	103530843	103531012	+
GWHAAZE00000003	CDS	103531256	103531337	+
GWHAAZE00000003	CDS	103531577	103531765	+
GWHAAZE00000003	CDS	103532402	103532470	+
GWHAAZE00000003	CDS	103532560	103532682	+

Transcript Sequence
>GWHTAAZE013516 CGTACACATATTTCTACAAAATACGCGAGTATTATACGCAAGTTAAGTTCCAATCCTTTGCTATATATATAGATATATAAATTGTGAGATTCGTTGGATTAGTCACCTAAATGACGGTGGACGCATTGTCATCCGTGTGTAATTTGGGGATTTTGGAGTCCCTTAATGAAGTTTTAATTACTGAAATTGTGGAGAGCTGGAATGGTTTTTGCTTCACCACCGAAAATCTTCTCAAAGGAAATTCTGAACTCTCATCAGATTCAAATATCCTAACTCATATTCGCACTCTCTGCAAGCACGGTCTTCACTCTCTGGTGGAACAACACTTCCTTCGCTCCATACAGGAAATGTTTGAGAAAAATGGTGCATTGAAGTTTTGGCGATATTTTGCTGCTTACAATAATGTTGCCACTCTGGAAATGAATGACTCTATTGCAATAATCTGTTTGTTTTATTTGCATCCTATCCCCATTGATGTTAAACAGAATCAAGAGGACAAGGTTCAGCAAGTGTTATGTAAAGCTCTGGAAGAGTTGTCATTGGAGAAACAGTACGAGGAGAAGTGCTTATCATTGTTGGTCAATGCTTTACAGTTGTACAAAGCTGACACATCAGAGGGAAGGCACAACTCTGATGACGAAAGAGTCAACCTTTTTTCTAAATATCAACTAATAGTGTCTTCTGTTCTCATGACCACCCTTCCACGGCATTTCCCAAAGATACTCCACTGGTTTTTTAAGCGAAGATTGGAAGAGTTAAGTGCAATAATGGATGGAGAGAGTGAAGGTGCTATTGAATCACAATATAAGCATGACATGGATGTAGATGAAAAAGGCAATGTACCATACAGAACCAGTGACATGGATATTGATGGATGCTATCCGCAAAGAAGGTTATTGGAGAATAACAAATTGGTGAAGAACATTGGAGTGGTTGTTCATGACCTTAGATGCCTTGGATTTACATCTATGACTGAAGATGCCTATGCTTCTGCTATATTTTTGCTTTTGAAGGCAAAAGTTCATGATTTGGCCGGCGATGACTACAGGAGTTCTGTTTTAGAATCTATTAAACGGTGGATACAGGCTGTGCCTCTCCAGTTCTTGCATGCACTTCTTGCTTATCTTGGCGATTCTGTTGGCTATGAAATCTCTTCTCCCATTGCCAAATCACCTTTGGCCTCATGGCCATCTTCATGCTGTCCTGGAACTGAGACTCCCTCCGAAGGTCTCATTAGATGGCAGCTTCGGTTAGAATATTTTGCCTATGAAACACTTCAGGATTTAAGAATAGCCAAACTTTTCGAGATTATTGTGGATTATCCTGACAGCTCTCCTGCTATCGAAGACTTGAAACAATGTCTCGAGTACACTGGACAACATTCAAAGCTGGTTGATTCATTTGTTGCTGCACTGAAATATCGCTTGCTTACGGCTGGTGCCTCCACCAATGACATATTGCACCAATATGTCTCTACTATAAAAGCCCTTCGGACAGTAGATCCAGCGGGGGTTTTTCTTGAAGCAGTTGGTGAACCAATAAGGGAATACTTAAGGGGAAGAAAAGATACCATTAAATGCATTGTGACCATGCTTACTGATGGAACTGGTGGGAATTCTAATGGACCTGGAAATACTGGGGATAGCCTTCTTGAAGAATTAAATAGAGATGAAGAAAATCAGGACAGCACTGGTGTTGATGATGATATCAACACTGATGACAAGCAAGCGTGGATTGATGCTGAACGCTGGGAGCCTGACCCTGTTGAGGCTGACCCTTTGAAGGGCAGCAGGTATCGAAGGAAAGTTCATATACTTGGGATGATAGTTGGCATCATTGGTTCAAAGGATCAGCTAGTTAATGAATATCGTGTTATGCTGGCTGAAAAGCTTCTCAACAAAACTGATTATGACATTGATGCAGAGATACGTACTTTGGAACTCCTTAAGATACATTTTGGAGAGGGCAGCATGCAGAGGTGTGAAATTATGCTCAATGATCTGATTGATTCCAAGAGGACAAACACAAATATAAAAGCAACCATTAATCAGCCAGCTCAAGCAGTTTTTACAATGTTATATTGCAATTATATTCTAGGTGTGGAGAGTGGGGAGCATGGCGTATCCCTGGATATTCTTGATGCTACGATCATATCTTCAAATTTCTGGCCACCTATCCAAGATGATGCCCTTACCATACCAGGGCCTGTAGACCAGCTTCTTAGTGACTATGCTAAAAGGTTTGGTGAAATCAAGACTCCTCGAAAGCTACTGTGGAAGAAAAATCTTGGTACAGTCAAGGTTAGGCACTTCAAAGTTTATTTAATGCAAATCAGTGCTCTCTTCCAAACTTGGACCTCCAAGAATCTTGCAGCTGCTATTGGGTTACCAGTGGATGTACTCAATAGGAGAATAAATTTCTGGATAAGCAAGGGAATTCTTGCAGAATCTTCGGGAGCTAACTCTAGTGACCACACATTTAGCCTGGTGGATAGCATGGTTGATGGTGGTAAGACCGATGTTAATGCTGGAAGCAGTGAGGAGATGATGGGTGATGAGGATGGAGAGAGATCAGTGGCCTCTGTTGAGGATCAACTGCGTAAAGAAATGACCGTGTATGAGAAATTTATCACGGGGATGCTAACTAATTTTGGCAGCATGGCATTAGATCGGATTCACAATACTCTCAAGATGTTTTGTGTAGCTGATCCTCCTTATGACAAGTCACTCCAACAGCTGCAAAGCTTCCTAAACGGCTTGGTTACAGAAGAGAAGTTGGAGTTCAGGGATGAGATGTACTTTTTAAAGAAGTGA

Network for GWHGAAZE013502

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00888.23	Cullin	572	772	5.00E-15
PF08672.12	ANAPC2	839	896	1.70E-22

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	Cullin

KEGG pathway

KO	Enzyme	pathway	mapID
K03349	APC2	Ubiquitin mediated proteolysis	map04120
		Cell cycle	map04110
		Cell cycle - yeast	map04111
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0006511	biological_process	ubiquitin-dependent protein catabolic process
GO:0031625	molecular_function	ubiquitin protein ligase binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.324
	SRR3591706	second leaf	3.411
	SRR3591707	mature leaf	1.585
	SRR3591708	Shoot apex	16.630
	SRR3591709	Stem	5.654
	SRR3591710	White floral bud	6.700
	SRR3591711	White flower	5.222
	SRR3591712	Green floral bud	11.933
	SRR3591713	Yellow flower	2.720
SRP173429	SRR8316895	Juvenile bud stage	5.208
	SRR8316896	Juvenile bud stage	7.691
	SRR8316897	Juvenile bud stage	3.645
	SRR8316894	Third green stage	3.945
	SRR8316900	Third green stage	10.374
	SRR8316901	Third green stage	8.718
	SRR8316898	Complete white stage	1.289
	SRR8316899	Complete white stage	4.783
	SRR8316903	Complete white stage	2.038
	SRR8316902	Silver flowering stage	1.087
	SRR8316904	Silver flowering stage	1.632
	SRR8316905	Silver flowering stage	0.331
	SRR8316906	Gold flowering stage	1.093
	SRR8316907	Gold flowering stage	1.277
	SRR8316908	Gold flowering stage	1.500
SRP132670	SRR6706286	Control	5.987
	SRR6706287	Light intensity 50%	6.444
	SRR6706288	Light intensity 20%	7.244
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.161
	CNS0095593	Slightly white alabastrum(diploid) 2	6.891
	CNS0095594	Slightly white alabastrum(diploid) 3	5.852
	CNS0095595	Whole white alabastrum(diploid) 2	9.087
	CNS0095596	Whole white alabastrum(diploid) 3	11.742
	CNS0095597	Whole white alabastrum(diploid) 4	9.185
	CNS0095598	Silvery flower (diploied) 1	4.077
	CNS0095599	Silvery flower (diploied) 2	4.243
	CNS0095600	Silvery flower (diploied) 3	3.675
	CNS0095601	Golden flower (diploid) 1	2.964
	CNS0095602	Golden flower (diploid) 2	2.394
	CNS0095603	Golden flower (diploid) 3	2.935
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.712
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.993
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.186
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.090
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.221
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.158
	CNS0095610	Silvery flower (tetraploid) 1	3.046
	CNS0095611	Silvery flower (tetraploid) 2	3.082
	CNS0095612	Silvery flower (tetraploid) 3	3.007
	CNS0095613	Golden flower (tetraploid) 1	1.086
	CNS0095614	Golden flower (tetraploid) 2	2.366
	CNS0095615	Golden flower (tetraploid) 3	0.970
CRA001975	CRR073297	Stem 1	6.721
	CRR073298	Stem 2	6.426
	CRR073299	Stem 3	6.895
	CRR073300	Leaf 1	9.467
	CRR073301	Leaf 2	6.417
	CRR073302	Leaf 3	6.086
	CRR073303	Juvenile bud 1	6.155
	CRR073304	Juvenile bud 2	3.602
	CRR073305	Juvenile bud 3	4.308
	CRR073306	Third green 1	0.877
	CRR073307	Third green 2	1.338
	CRR073308	Third green 3	1.009
	CRR073309	Second white 1	0.540
	CRR073310	Second white 2	0.509
	CRR073311	Second white 3	0.291
	CRR073312	Silver flowering 1	1.080
	CRR073313	Silver flowering 2	1.116
	CRR073314	Silver flowering 3	0.324
	CRR073315	Gold flowering 1	1.520
	CRR073316	Gold flowering 2	2.181
	CRR073317	Gold flowering 3	1.078
	CRR073318	Tawny withering 1	6.859
	CRR073319	Tawny withering 2	7.126
	CRR073320	Tawny withering 3	5.757