Gene detail

Detail information of GWHGAAZE013494

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010258415.1	0	PREDICTED: serine/threonine-protein kinase TNNI3K-like [Nelumbo nucifera]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	4E-46	Serine/threonine-protein kinase HT1
trEMBL	tr\|M1CR37\|M1CR37_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400072865}
TAIR10	AT1G14000.1	0	VH1-interacting kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103381346	103385658	+
GWHAAZE00000003	mRNA	103381346	103385658	+
GWHAAZE00000003	exon	103381346	103381564	+
GWHAAZE00000003	exon	103382455	103382529	+
GWHAAZE00000003	exon	103382817	103382933	+
GWHAAZE00000003	exon	103383718	103383812	+
GWHAAZE00000003	exon	103384035	103384155	+
GWHAAZE00000003	exon	103384267	103384346	+
GWHAAZE00000003	exon	103384472	103384531	+
GWHAAZE00000003	exon	103384768	103384889	+
GWHAAZE00000003	exon	103384987	103385072	+
GWHAAZE00000003	exon	103385156	103385271	+
GWHAAZE00000003	exon	103385535	103385658	+
GWHAAZE00000003	CDS	103381346	103381564	+
GWHAAZE00000003	CDS	103382455	103382529	+
GWHAAZE00000003	CDS	103382817	103382933	+
GWHAAZE00000003	CDS	103383718	103383812	+
GWHAAZE00000003	CDS	103384035	103384155	+
GWHAAZE00000003	CDS	103384267	103384346	+
GWHAAZE00000003	CDS	103384472	103384531	+
GWHAAZE00000003	CDS	103384768	103384889	+
GWHAAZE00000003	CDS	103384987	103385072	+
GWHAAZE00000003	CDS	103385156	103385271	+
GWHAAZE00000003	CDS	103385535	103385658	+

Transcript Sequence
>GWHTAAZE013508 ATGAGTGTTAGCGAGGGAAGCTCGGGGCATTCTCCGGCGCCGGCGAAGAAGAATGAGAAGGCAAAAGTGAGCCGTACGTCAATGATACTGTGGCACGCTCATCAGAATGACCTAGCTGGGGTAAGGAAACTGCTCGAGGAGGATCGTGCTTTGGTTCGCGCTAGGGATTACGATAGTCGGACTCCGCTTCACGTCGCCTCTCTTCACGGTTGGGTTGAGCCTCTAGCTGATGCAGAAGGGGCTAAAAAACATGGGATGATTGAGTTGCTAAAGTCATACGGCGGTCTATCTTTTGGCCAAAGTGGTAGCCATTTTGAACCAAGACCTGTTCCACCCCCTTTACCCAATAAGTGCGACTGGGAAGTTGACCCTCCTGAGCTGGACTTCTCCAACTCATCTATCATAGGGAAGGGGTCCTTTGGTGAGATCGTAAAAGCATGTTGGCGTGGAACACCAGTGGCTGTCAAACGAATTCTTCCCAATCTTTCAGATGATAAATTGGTGATTCAGGACTTCAGGCACGAAGTGAATTTGCTAGTGAAGCTTCGCCACCCTAACATAGTGCAATTTCTTGGAGCTGTTACTGAAAAGAAACCATTAATGCTAATTACGGAGTATTTACGGGGGGGTGATCTTCACCAATATCTGAAGGATAAGGGTGCACTTCATCCATCAACAGCAGTCAACTTTGCATTAGACATTGCCAGAGGCATGGCTTATCTTCACAATGAGCCAAATGTCATAATTCACAGAGACTTAAAACCAAGGAATGTTCTTTTGGTCAACTCCAGCGCAGACCATCTAAAAGTTGGCGACTTTGGACTAAGTAAGCTTATTAAGGTTCAAAATTCTCATGATGTGTATAAGATGACAGGCGAGACGGGAAGCTATCGGTATATGGCTCCTGAAGTCTTCAAGCACCGTAAATATGATAAGAAGGTTGATGTTTTCTCTTTTGCAATGATACTATATGAGATGATTGAAGGTGATGCACCGCTATCGCAATATGAACCTTATGAAGCAGCCAAATTTGTGGCAGAAGGACACAGGCCTTATTTCAAGGCAAAAGGTTACACTGCTGAGTTGAGAGAGTTGACGGATAGGTGCTGGGCAGCAGATATGAACAATAGGCCTACTTTCTTGGAGATTCTGAAAAGGCTTGAAAGAGTAAGGGATAGCCTACCTGCAGATCATCACTGGAACATCTTTACTTGA

Network for GWHGAAZE013494

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	132	387	4.20E-65

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.876
	SRR3591706	second leaf	3.190
	SRR3591707	mature leaf	2.506
	SRR3591708	Shoot apex	6.767
	SRR3591709	Stem	6.057
	SRR3591710	White floral bud	16.244
	SRR3591711	White flower	3.799
	SRR3591712	Green floral bud	21.720
	SRR3591713	Yellow flower	3.398
SRP173429	SRR8316895	Juvenile bud stage	4.046
	SRR8316896	Juvenile bud stage	10.209
	SRR8316897	Juvenile bud stage	4.538
	SRR8316894	Third green stage	5.072
	SRR8316900	Third green stage	19.417
	SRR8316901	Third green stage	19.045
	SRR8316898	Complete white stage	4.950
	SRR8316899	Complete white stage	11.835
	SRR8316903	Complete white stage	3.707
	SRR8316902	Silver flowering stage	1.568
	SRR8316904	Silver flowering stage	1.661
	SRR8316905	Silver flowering stage	1.008
	SRR8316906	Gold flowering stage	3.131
	SRR8316907	Gold flowering stage	3.024
	SRR8316908	Gold flowering stage	1.715
SRP132670	SRR6706286	Control	8.606
	SRR6706287	Light intensity 50%	10.789
	SRR6706288	Light intensity 20%	10.221
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.585
	CNS0095593	Slightly white alabastrum(diploid) 2	8.575
	CNS0095594	Slightly white alabastrum(diploid) 3	9.677
	CNS0095595	Whole white alabastrum(diploid) 2	16.077
	CNS0095596	Whole white alabastrum(diploid) 3	18.789
	CNS0095597	Whole white alabastrum(diploid) 4	17.922
	CNS0095598	Silvery flower (diploied) 1	2.392
	CNS0095599	Silvery flower (diploied) 2	2.735
	CNS0095600	Silvery flower (diploied) 3	4.938
	CNS0095601	Golden flower (diploid) 1	3.003
	CNS0095602	Golden flower (diploid) 2	3.635
	CNS0095603	Golden flower (diploid) 3	3.827
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.622
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.652
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.542
	CNS0095607	Whole white alabastrum(tetraploid) 1	26.850
	CNS0095608	Whole white alabastrum(tetraploid) 2	27.594
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.933
	CNS0095610	Silvery flower (tetraploid) 1	4.625
	CNS0095611	Silvery flower (tetraploid) 2	4.220
	CNS0095612	Silvery flower (tetraploid) 3	5.322
	CNS0095613	Golden flower (tetraploid) 1	2.038
	CNS0095614	Golden flower (tetraploid) 2	2.443
	CNS0095615	Golden flower (tetraploid) 3	1.968
CRA001975	CRR073297	Stem 1	7.568
	CRR073298	Stem 2	7.790
	CRR073299	Stem 3	8.084
	CRR073300	Leaf 1	17.224
	CRR073301	Leaf 2	12.681
	CRR073302	Leaf 3	10.187
	CRR073303	Juvenile bud 1	11.644
	CRR073304	Juvenile bud 2	17.416
	CRR073305	Juvenile bud 3	6.676
	CRR073306	Third green 1	2.674
	CRR073307	Third green 2	3.347
	CRR073308	Third green 3	2.421
	CRR073309	Second white 1	0.323
	CRR073310	Second white 2	0.994
	CRR073311	Second white 3	0.908
	CRR073312	Silver flowering 1	2.369
	CRR073313	Silver flowering 2	1.860
	CRR073314	Silver flowering 3	1.244
	CRR073315	Gold flowering 1	3.212
	CRR073316	Gold flowering 2	1.226
	CRR073317	Gold flowering 3	2.285
	CRR073318	Tawny withering 1	3.589
	CRR073319	Tawny withering 2	2.936
	CRR073320	Tawny withering 3	3.287