Detail information of GWHGAAZE013491


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY15648.13.7532E-14BnaA07g08190D [Brassica napus]
Swissprottr|Q9LP45|PSD11_ARATH1E-1226S proteasome non-ATPase regulatory subunit 11 homolog
trEMBLtr|A0A078FTK9|A0A078FTK9_BRANA1E-14BnaA07g08190D protein {ECO:0000313|EMBL:CDY15648.1}
TAIR10AT1G29150.14E-11non-ATPase subunit 9

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene103357155103357567+
GWHAAZE00000003mRNA103357155103357567+
GWHAAZE00000003exon103357155103357352+
GWHAAZE00000003exon103357466103357567+
GWHAAZE00000003CDS103357155103357352+
GWHAAZE00000003CDS103357466103357567+
Transcript Sequence

Network for GWHGAAZE013491

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03036PSMD11, RPN6 Proteasome map03050

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.104
SRR3591706second leaf6.454
SRR3591707mature leaf7.414
SRR3591708Shoot apex8.426
SRR3591709Stem10.798
SRR3591710White floral bud2.954
SRR3591711White flower4.438
SRR3591712Green floral bud5.378
SRR3591713Yellow flower3.188
SRP173429 SRR8316895Juvenile bud stage 2.436
SRR8316896Juvenile bud stage 3.957
SRR8316897Juvenile bud stage 2.799
SRR8316894Third green stage 1.545
SRR8316900Third green stage 4.517
SRR8316901Third green stage 3.170
SRR8316898Complete white stage 2.217
SRR8316899Complete white stage 5.595
SRR8316903Complete white stage 3.729
SRR8316902Silver flowering stage1.660
SRR8316904Silver flowering stage3.098
SRR8316905Silver flowering stage0.989
SRR8316906Gold flowering stage 3.370
SRR8316907Gold flowering stage 5.008
SRR8316908Gold flowering stage 4.382
SRP132670SRR6706286Control1.313
SRR6706287Light intensity 50%1.140
SRR6706288Light intensity 20%1.656
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.371
CNS0095593Slightly white alabastrum(diploid) 210.690
CNS0095594Slightly white alabastrum(diploid) 35.336
CNS0095595Whole white alabastrum(diploid) 24.781
CNS0095596Whole white alabastrum(diploid) 34.117
CNS0095597Whole white alabastrum(diploid) 44.530
CNS0095598Silvery flower (diploied) 17.953
CNS0095599Silvery flower (diploied) 22.214
CNS0095600Silvery flower (diploied) 32.678
CNS0095601Golden flower (diploid) 17.616
CNS0095602Golden flower (diploid) 23.091
CNS0095603Golden flower (diploid) 34.283
CNS0095604Slightly white alabastrum(tetraploid) 12.963
CNS0095605Slightly white alabastrum(tetraploid) 22.536
CNS0095606Slightly white alabastrum(tetraploid) 33.842
CNS0095607Whole white alabastrum(tetraploid) 13.953
CNS0095608Whole white alabastrum(tetraploid) 23.804
CNS0095609Whole white alabastrum(tetraploid) 31.926
CNS0095610Silvery flower (tetraploid) 11.121
CNS0095611Silvery flower (tetraploid) 22.086
CNS0095612Silvery flower (tetraploid) 31.537
CNS0095613Golden flower (tetraploid) 11.536
CNS0095614Golden flower (tetraploid) 22.210
CNS0095615Golden flower (tetraploid) 31.169
CRA001975CRR073297Stem 14.810
CRR073298Stem 23.904
CRR073299Stem 31.693
CRR073300Leaf 12.741
CRR073301Leaf 23.690
CRR073302Leaf 32.304
CRR073303Juvenile bud 12.277
CRR073304Juvenile bud 21.700
CRR073305Juvenile bud 32.890
CRR073306Third green 10.663
CRR073307Third green 20.545
CRR073308Third green 31.083
CRR073309Second white 10.736
CRR073310Second white 20.699
CRR073311Second white 31.342
CRR073312Silver flowering 10.890
CRR073313Silver flowering 20.000
CRR073314Silver flowering 31.665
CRR073315Gold flowering 17.897
CRR073316Gold flowering 23.411
CRR073317Gold flowering 31.656
CRR073318Tawny withering 12.957
CRR073319Tawny withering 23.316
CRR073320Tawny withering 31.558