Gene detail

Detail information of GWHGAAZE013490

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007222547.1	9.6292E-155	hypothetical protein PRUPE_ppa006204mg [Prunus persica]
Swissprot	tr\|Q9LP45\|PSD11_ARATH	1E-126	26S proteasome non-ATPase regulatory subunit 11 homolog
trEMBL	tr\|M5XE62\|M5XE62_PRUPE	4E-155	Uncharacterized protein {ECO:0000313\|EMBL:EMJ23746.1}
TAIR10	AT1G29150.1	3E-85	non-ATPase subunit 9

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	103356071	103357075	+
GWHAAZE00000003	mRNA	103356071	103357075	+
GWHAAZE00000003	exon	103356071	103356340	+
GWHAAZE00000003	exon	103356414	103356827	+
GWHAAZE00000003	exon	103356911	103357075	+
GWHAAZE00000003	CDS	103356071	103356340	+
GWHAAZE00000003	CDS	103356414	103356827	+
GWHAAZE00000003	CDS	103356911	103357075	+

Transcript Sequence
>GWHTAAZE013504 ATGTCTTTATCACATCTCCCGGCAACCACCGAATCACTCATTCAGGCCTCAGAAGCCAAAGCCCCATCTGAGGCAATTGCCATTCTTTATCGCGTAATTGACAACCCTTCCTCTTCTCCTGAAGCTCTGAGGATAAAAGAGCAGGCCATTTCGAGTCTCTCGGATCTTCTTAGACAAGAGAACCGGGCAGGGGAGCTCCAAAACCCTCTGAACCAATTACGCCCTTTCCTTTCCTTGATCCCCAAGGCAAAAACTGCAAAAATAGTCCGTTGGACCCGTGCTGAGAAGCGGACTTTTCTCCGTCAACGAATTGAAGCAAAACTTGCTGCTCTTTTGATGGAAAGCAAAGAGTATTCTGAGGCACTAAGCCTCCTTTCAGAACTAATCAAGGAGGTGAGAAGGTTAGACGACAAGCTGCTTCTTGTTGAGATGGACTTTGTAGAGAGCAAGCTCCATTTCTCTTTGAGAAACCTTCCCAAAGCCAAGGCTGCACTTGCTGCAGCAAGAACAGCTGCAAATGCCATTTATGTGCCTCCAGCTCAGCAGGGTGTCATAGATTTGCAGAGCGGGATTCTCCACGCAGAAGAGAAGGATTATAAAACTGCGTACAGCTATTTCTTTGAAGCATTTGAGGCCTTCAACGCTCTTGAAGATCCTCAAGCAGTGTACACTGTACAGCCTCAACATCAGGGCCTGGAACTCGATGCAATGAAAGCCGTTGCTGATGCTCATTCAAAACGCTCTTTGAAGCTCTTCGAGGCTGCTCTTAGGGATTTTAAGGCACAGTTAGAGGAAGACCTGATTGTCCACAGGCACCTTTCGTCACTCTGCGATACGCTGATGGAGTAG

Network for GWHGAAZE013490

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF18055.2	RPN6_N	17	90	1.50E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03036	PSMD11, RPN6	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.510
	SRR3591706	second leaf	7.123
	SRR3591707	mature leaf	7.802
	SRR3591708	Shoot apex	6.285
	SRR3591709	Stem	8.049
	SRR3591710	White floral bud	5.104
	SRR3591711	White flower	7.023
	SRR3591712	Green floral bud	4.788
	SRR3591713	Yellow flower	4.538
SRP173429	SRR8316895	Juvenile bud stage	2.029
	SRR8316896	Juvenile bud stage	3.526
	SRR8316897	Juvenile bud stage	1.373
	SRR8316894	Third green stage	1.589
	SRR8316900	Third green stage	4.709
	SRR8316901	Third green stage	4.407
	SRR8316898	Complete white stage	1.987
	SRR8316899	Complete white stage	6.493
	SRR8316903	Complete white stage	4.533
	SRR8316902	Silver flowering stage	2.479
	SRR8316904	Silver flowering stage	2.884
	SRR8316905	Silver flowering stage	1.362
	SRR8316906	Gold flowering stage	3.732
	SRR8316907	Gold flowering stage	4.053
	SRR8316908	Gold flowering stage	3.804
SRP132670	SRR6706286	Control	5.317
	SRR6706287	Light intensity 50%	4.668
	SRR6706288	Light intensity 20%	5.524
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.024
	CNS0095593	Slightly white alabastrum(diploid) 2	5.428
	CNS0095594	Slightly white alabastrum(diploid) 3	2.909
	CNS0095595	Whole white alabastrum(diploid) 2	2.327
	CNS0095596	Whole white alabastrum(diploid) 3	3.086
	CNS0095597	Whole white alabastrum(diploid) 4	3.192
	CNS0095598	Silvery flower (diploied) 1	5.666
	CNS0095599	Silvery flower (diploied) 2	2.623
	CNS0095600	Silvery flower (diploied) 3	5.135
	CNS0095601	Golden flower (diploid) 1	5.497
	CNS0095602	Golden flower (diploid) 2	6.020
	CNS0095603	Golden flower (diploid) 3	4.679
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.574
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.540
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.794
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.504
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.452
	CNS0095610	Silvery flower (tetraploid) 1	1.996
	CNS0095611	Silvery flower (tetraploid) 2	2.247
	CNS0095612	Silvery flower (tetraploid) 3	2.756
	CNS0095613	Golden flower (tetraploid) 1	1.574
	CNS0095614	Golden flower (tetraploid) 2	1.675
	CNS0095615	Golden flower (tetraploid) 3	2.221
CRA001975	CRR073297	Stem 1	6.066
	CRR073298	Stem 2	5.970
	CRR073299	Stem 3	4.440
	CRR073300	Leaf 1	6.062
	CRR073301	Leaf 2	5.649
	CRR073302	Leaf 3	3.231
	CRR073303	Juvenile bud 1	4.011
	CRR073304	Juvenile bud 2	2.622
	CRR073305	Juvenile bud 3	4.470
	CRR073306	Third green 1	1.353
	CRR073307	Third green 2	2.046
	CRR073308	Third green 3	1.496
	CRR073309	Second white 1	1.721
	CRR073310	Second white 2	2.148
	CRR073311	Second white 3	1.267
	CRR073312	Silver flowering 1	1.361
	CRR073313	Silver flowering 2	0.790
	CRR073314	Silver flowering 3	1.849
	CRR073315	Gold flowering 1	4.755
	CRR073316	Gold flowering 2	6.608
	CRR073317	Gold flowering 3	2.250
	CRR073318	Tawny withering 1	6.170
	CRR073319	Tawny withering 2	4.717
	CRR073320	Tawny withering 3	5.053