Gene detail

Detail information of GWHGAAZE013463

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI21210.3	1.6584E-174	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9S7I6\|RPK2_ARATH	1E-84	LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor)
trEMBL	tr\|M1BIC2\|M1BIC2_SOLTU	5E-141	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400045887}
TAIR10	AT3G02130.1	2E-73	receptor-like protein kinase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102990664	102992859	-
GWHAAZE00000003	mRNA	102990664	102992859	-
GWHAAZE00000003	exon	102990664	102990912	-
GWHAAZE00000003	exon	102991216	102992859	-
GWHAAZE00000003	CDS	102991216	102992859	-
GWHAAZE00000003	CDS	102990664	102990912	-

Transcript Sequence
>GWHTAAZE013477 ATGCTGTCCGAGAAAATGATTCTCTTGGAATTCAAGAACTCTATTTCTGACCCTTCTGGGCTTCTATCCACCTGGAGAGCTGACAATTCCAGATACTGTTCGTGGTTCGGGGTCACATGCAATTCAGATTCAAGGGTTTTGGGGCTGAAAATAGCCGGTAATGCAGGTAATAATAGTTGTCTTGCTTCTTGTTTTAAGTATGGAGAATTTGCATTACATGGCTTTGGAATTAGAAGAAACTGTTCCGCTAGAAATGGGAAATTGATTGGAGAACTGTCTCCTGTAATTGGAAAGCTCACTGAACTTAGGGTCTTATCTCTTTCCTTTCATGAACTAAATGGTGAAATTCCTGTTGAAATTTGGGGTTTAAAGAATCTTCAAGTTCTTGATCTTGAAGGGAATTCATTATCCGGGAATTTACCCAGCGAATTCACCGGTTTTAGGAAATTGCAAGTTCTTAACCTCTGTTTTAATCGAATTGTTGGGGAGATTCCGCGTTCCCTTTCAGAATGTAGGGGTTTACGGGTACTGAATCTAGAGGGAAATGAACTGGAGGGGTTGATTCCTGGATTTCTTGGTAGTTTTAAGAAATTAAAAGGGCTTTATCTGTCATCTAATCGGTTAGTTGGTTCAGTTCCAGATGAATTGGTGATTAATTGTTGGAATCTTAGACATTTGGACTTGTCAGCTAATTTCCTACAGGGGAAGATTCCTCCTACTTTGAGAAATTGTGACCAATTAAGGACAATTCTGCTCTTCTCGAATCAATTTGTTGGTGTCATTCCTCGCGAGCTTGGTCAGCTTCAAAGACTTGAGGTTCTAGATTTGAGCCAAAACAAGCTGAATGGTCAGATTCCAGTTGACCTTAGCCACTTGCAAAGTTTGAAATATGTTTCCCTTGCGTGTAATAACCTATCTGGTTCCATTCCTTCTATGTTCACACGATTACACTCACTTAAATATTTAGATCTTTCATTAAACTCCTTGTCCGGTGAAATTCCACAAGGCCTTGTTAACTTGTCTCGAAGAATGATGTGGCAATCCGTCAAATTATCTATACCACCTTCAGATTTACAGGGACAGGGTCTCAATGAGACTTATGCAAATTCACCACCATCAAGTAAATCCAAAACTGGGAAAAAGGGAATGAGTTCTATTGATATGGCAACAATAATATCTGCAACAGCCATTGTTACTGTTCTTCTGGTTCTTGTCGTTCTCTTCTTTTGTATAAGAAAACGAAAACAAAATTCTACAGCTCAGGTTTCCGAACCATATAACAGAAGGGAAATCGTAGTTTTCAATGATATAGGGGTACCGTTGACTCTTGATACTGTAATTGAGGCAACGGGGAATTTTAACTCAAGCAACTGCATTGGAAATGGTGGCTTTGGCGCCACTTACAAGGCCGAGGTTTCCCCAGGAGTCATATTGGCGGTAAAGAAGCTAACCATCGAAAGGTGCCAAGGGGTCCGCCAATTTGATGCCGAGGTTCGTTGCCTTAAAAGGATACAACACAAAAATCTCATAACTTTGGTGGGGTACTATGCGAGTGAAGCAGAAATGTTCCTTATCTATAACTATCTCCCAGGAGGTAATTTGGAACAATTCATTCAAAGAGCCACAAGAATTGTTGACTGGAAGAGGGCTCTGGATCCTTCTTTTTCTGCACATGCGAATGGATTTACTATTGTGACGTGGGCATCCATGCTATTGCGACGTGGTCAAGCAAAGGAGGTGTTCATCGCCGGTCTGTGGGATGTGGGTCCCCAGGATGTTCTGGTGGATGTGCTGCATTTGGCGATAATGTGCACGGGCGAGACCCTCACAGGTAGGCCATCCATGAAGCAAGTTGTGCAGCGGCTAAAGCAGCTTGAGCCTCATTCGAGTTAG

Network for GWHGAAZE013463

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	5	41	1.30E-11
PF00560.34	LRR_1	125	145	0.28
PF13855.7	LRR_8	148	208	1.90E-09
PF00560.34	LRR_1	222	244	0.027
PF13855.7	LRR_8	294	341	2.60E-07
PF00069.26	Pkinase	455	544	1.30E-11

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-XV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.685
	SRR3591706	second leaf	4.370
	SRR3591707	mature leaf	1.571
	SRR3591708	Shoot apex	9.484
	SRR3591709	Stem	9.520
	SRR3591710	White floral bud	3.970
	SRR3591711	White flower	3.252
	SRR3591712	Green floral bud	2.909
	SRR3591713	Yellow flower	0.946
SRP173429	SRR8316895	Juvenile bud stage	8.368
	SRR8316896	Juvenile bud stage	4.716
	SRR8316897	Juvenile bud stage	3.718
	SRR8316894	Third green stage	3.527
	SRR8316900	Third green stage	4.030
	SRR8316901	Third green stage	4.154
	SRR8316898	Complete white stage	0.085
	SRR8316899	Complete white stage	7.375
	SRR8316903	Complete white stage	0.686
	SRR8316902	Silver flowering stage	0.183
	SRR8316904	Silver flowering stage	0.553
	SRR8316905	Silver flowering stage	0.198
	SRR8316906	Gold flowering stage	0.942
	SRR8316907	Gold flowering stage	0.597
	SRR8316908	Gold flowering stage	1.180
SRP132670	SRR6706286	Control	1.224
	SRR6706287	Light intensity 50%	1.815
	SRR6706288	Light intensity 20%	1.310
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.712
	CNS0095593	Slightly white alabastrum(diploid) 2	5.962
	CNS0095594	Slightly white alabastrum(diploid) 3	4.032
	CNS0095595	Whole white alabastrum(diploid) 2	3.117
	CNS0095596	Whole white alabastrum(diploid) 3	1.213
	CNS0095597	Whole white alabastrum(diploid) 4	2.877
	CNS0095598	Silvery flower (diploied) 1	5.389
	CNS0095599	Silvery flower (diploied) 2	6.474
	CNS0095600	Silvery flower (diploied) 3	4.498
	CNS0095601	Golden flower (diploid) 1	9.238
	CNS0095602	Golden flower (diploid) 2	7.080
	CNS0095603	Golden flower (diploid) 3	8.373
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.565
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.207
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.190
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.475
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.257
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.596
	CNS0095610	Silvery flower (tetraploid) 1	1.039
	CNS0095611	Silvery flower (tetraploid) 2	0.752
	CNS0095612	Silvery flower (tetraploid) 3	0.715
	CNS0095613	Golden flower (tetraploid) 1	0.175
	CNS0095614	Golden flower (tetraploid) 2	0.528
	CNS0095615	Golden flower (tetraploid) 3	0.220
CRA001975	CRR073297	Stem 1	2.454
	CRR073298	Stem 2	2.041
	CRR073299	Stem 3	2.413
	CRR073300	Leaf 1	2.344
	CRR073301	Leaf 2	2.802
	CRR073302	Leaf 3	2.075
	CRR073303	Juvenile bud 1	2.124
	CRR073304	Juvenile bud 2	1.414
	CRR073305	Juvenile bud 3	4.635
	CRR073306	Third green 1	0.565
	CRR073307	Third green 2	0.313
	CRR073308	Third green 3	0.535
	CRR073309	Second white 1	0.103
	CRR073310	Second white 2	0.195
	CRR073311	Second white 3	0.320
	CRR073312	Silver flowering 1	0.647
	CRR073313	Silver flowering 2	0.925
	CRR073314	Silver flowering 3	0.720
	CRR073315	Gold flowering 1	1.056
	CRR073316	Gold flowering 2	2.269
	CRR073317	Gold flowering 3	2.215
	CRR073318	Tawny withering 1	2.199
	CRR073319	Tawny withering 2	4.419
	CRR073320	Tawny withering 3	3.940