Gene detail

Detail information of GWHGAAZE013456

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002311349.2	hypothetical protein POPTR_0008s09700g [Populus trichocarpa]
trEMBL	tr\|B9HIG0\|B9HIG0_POPTR	Uncharacterized protein {ECO:0000313\|EMBL:EEE88716.2}
TAIR10	AT4G30000.1	Dihydropterin pyrophosphokinase / Dihydropteroate synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102925523	102926968	-
GWHAAZE00000003	mRNA	102925523	102926968	-
GWHAAZE00000003	exon	102925523	102926968	-
GWHAAZE00000003	CDS	102925523	102926968	-

Transcript Sequence
>GWHTAAZE013470 TCATCCCCAAATTCCTCTGTCGAAGTTTATTCCCAAGACCAAGAAGTAGTAATCGCCTTGGGAAGCAATGTGGGGGATAGACTTCATAATTTCCATGAAGCCTTGAAGCTGATGAAGAAATCAGGCATAAACATTTCTAGGCACGCTTGCTTATACGAGACAGCCCCTGCCTATGTGACTGATCAGCCTCAATTCCTTAACTCCGCTGTTAGAGGTTTCACAAAACTAGGCCCCCACGACTTACTGGGAGCTCTTAAAAAGATCGAGAAGGAAATGGGTCGTACTGATGGGATCAGATATGGCCCACGACCAATTGACCTTGATATATTGTTCTATGGCAAGTTTAGGATCGGTTCTGAGATTCTCACGGTTCCTCATGAAAGAATCTGGGAGAGACCATTTGTCATTGCCCCACTGGTCGATTTACTGGGATCGGATATAGAAAGTGACACAGTTGCATGCTGGCACTCGTTTTCGGTAGATTCCAGTGGAATCTTTAAATTATGGGAGAAACTGGGTGGTGAATCTTTGATAGGAAAGGAAGGGATGAAACGGGTAATGCCTGTCGGGAATATCATATGGGACTGGTCTAAGAAAACATCTGTCATGGGTATACTTAATTTGACTCCAGATAGTTTTAGTGACGGAGGGAAGTTTAACTCTGTGGGTGCTGCGGTTTCCCAGGTCCATTCCATGATATTGGAGGGAGCAGATATAATCGATATCGGTGCTCAGTCCACACGCCCCAATGCATCTAGGGTTTCGCCTGAGGAAGAATTGGATAGACTAATCCCGGTTTTGGAAGCTGTTCTAAAGATGCCCGAGGTAGAGGGAAAATTTGTATCTATCGATACATTTTATTCGCAGGTTGCTTCTGAAGCAGTTAGCAAGGGGGCGCATATTGTAAATGACGTATCGGGTGGGAATTTGGACCCTAACATGCTTAATGTTGTCGCAGGCCTAATGGTTCCTTATGTTTCAATGCACATGAGGGGGGACCCTTCTACTATGCAGAATAGTGAGAATTTGAAGTACGAAAATGTCTGTAAGCAAGTTGCTCTGGAGTTGAATGAGCGGGCTAGAGATGCAGAGTTATCAGGTATCCCTGCATGGAGGATCATTGTGGACCCTGGGATTGGTTTTTCGAAGAAAACTGAAGGTAATTTGGATATTCTAATTGGTTTGCAGACTATAAGGAGAGAGATTGGGAGGAAGAGTTTGGCTGTGTCTCGTGCTCCAATTTTGATTGGACCATCGAGAAAAAGATTTATAGGTGAAATATGTGGTTGTGCTGATGCAGTTGATAGAGATCCGGGAACTGTTGCTTCGGTGACCACTGGGATACTGGGTGGTGCAAATATTGTTAGGGTGCATAATGTTAGAGATAATGTGGCTGCTGTGAGGCTGTGTGATGCAATGTTGGACCGGAGGAAATTTTTGGCATAG

Network for GWHGAAZE013456

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01288.21	HPPK	17	142	2.50E-32
PF00809.23	Pterin_bind	203	458	6.30E-83

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13941	folKP	Metabolic pathways	map01100
K13941	folKP	Folate biosynthesis	map00790

Gene Ontology

GO term	Ontology	Name
GO:0009396	biological_process	folic acid-containing compound biosynthetic process
GO:0044237	biological_process	cellular metabolic process
GO:0042558	biological_process	pteridine-containing compound metabolic process
GO:0003848	molecular_function	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity
GO:0004156	molecular_function	dihydropteroate synthase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.317
	SRR3591706	second leaf	6.950
	SRR3591707	mature leaf	5.287
	SRR3591708	Shoot apex	11.969
	SRR3591709	Stem	7.301
	SRR3591710	White floral bud	7.395
	SRR3591711	White flower	9.852
	SRR3591712	Green floral bud	13.824
	SRR3591713	Yellow flower	4.564
SRP173429	SRR8316895	Juvenile bud stage	8.687
	SRR8316896	Juvenile bud stage	12.160
	SRR8316897	Juvenile bud stage	4.377
	SRR8316894	Third green stage	4.355
	SRR8316900	Third green stage	14.517
	SRR8316901	Third green stage	12.622
	SRR8316898	Complete white stage	3.011
	SRR8316899	Complete white stage	12.242
	SRR8316903	Complete white stage	3.985
	SRR8316902	Silver flowering stage	1.250
	SRR8316904	Silver flowering stage	2.731
	SRR8316905	Silver flowering stage	0.777
	SRR8316906	Gold flowering stage	2.894
	SRR8316907	Gold flowering stage	1.636
	SRR8316908	Gold flowering stage	3.327
SRP132670	SRR6706286	Control	12.493
	SRR6706287	Light intensity 50%	11.878
	SRR6706288	Light intensity 20%	13.481
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.439
	CNS0095593	Slightly white alabastrum(diploid) 2	13.074
	CNS0095594	Slightly white alabastrum(diploid) 3	12.374
	CNS0095595	Whole white alabastrum(diploid) 2	10.276
	CNS0095596	Whole white alabastrum(diploid) 3	11.018
	CNS0095597	Whole white alabastrum(diploid) 4	8.609
	CNS0095598	Silvery flower (diploied) 1	7.806
	CNS0095599	Silvery flower (diploied) 2	7.197
	CNS0095600	Silvery flower (diploied) 3	6.275
	CNS0095601	Golden flower (diploid) 1	6.106
	CNS0095602	Golden flower (diploid) 2	5.691
	CNS0095603	Golden flower (diploid) 3	5.810
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.589
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.215
	CNS0095606	Slightly white alabastrum(tetraploid) 3	19.948
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.937
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.004
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.164
	CNS0095610	Silvery flower (tetraploid) 1	6.351
	CNS0095611	Silvery flower (tetraploid) 2	8.350
	CNS0095612	Silvery flower (tetraploid) 3	3.797
	CNS0095613	Golden flower (tetraploid) 1	2.725
	CNS0095614	Golden flower (tetraploid) 2	6.261
	CNS0095615	Golden flower (tetraploid) 3	1.935
CRA001975	CRR073297	Stem 1	14.511
	CRR073298	Stem 2	12.449
	CRR073299	Stem 3	14.068
	CRR073300	Leaf 1	11.637
	CRR073301	Leaf 2	13.198
	CRR073302	Leaf 3	11.359
	CRR073303	Juvenile bud 1	13.507
	CRR073304	Juvenile bud 2	8.157
	CRR073305	Juvenile bud 3	14.481
	CRR073306	Third green 1	2.082
	CRR073307	Third green 2	2.153
	CRR073308	Third green 3	2.101
	CRR073309	Second white 1	2.295
	CRR073310	Second white 2	0.689
	CRR073311	Second white 3	1.267
	CRR073312	Silver flowering 1	0.929
	CRR073313	Silver flowering 2	1.737
	CRR073314	Silver flowering 3	0.698
	CRR073315	Gold flowering 1	5.913
	CRR073316	Gold flowering 2	9.474
	CRR073317	Gold flowering 3	7.257
	CRR073318	Tawny withering 1	7.017
	CRR073319	Tawny withering 2	9.069
	CRR073320	Tawny withering 3	10.586