Gene detail

Detail information of GWHGAAZE013427

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP31423.1	1.5368E-159	hypothetical protein JCGZ_11799 [Jatropha curcas]
Swissprot	tr\|Q9CAA9\|BH049_ARATH	4E-81	Transcription factor bHLH49
trEMBL	tr\|A0A067K8S8\|A0A067K8S8_JATCU	6E-160	Uncharacterized protein {ECO:0000313\|EMBL:KDP31423.1}
TAIR10	AT1G68920.3	7E-66	basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102581214	102583490	+
GWHAAZE00000003	mRNA	102581214	102583490	+
GWHAAZE00000003	exon	102581214	102581314	+
GWHAAZE00000003	exon	102581718	102582700	+
GWHAAZE00000003	exon	102582807	102583028	+
GWHAAZE00000003	exon	102583127	102583192	+
GWHAAZE00000003	exon	102583308	102583376	+
GWHAAZE00000003	exon	102583470	102583490	+
GWHAAZE00000003	five_prime_UTR	102581214	102581314	+
GWHAAZE00000003	five_prime_UTR	102581718	102581857	+
GWHAAZE00000003	CDS	102581858	102582700	+
GWHAAZE00000003	CDS	102582807	102583028	+
GWHAAZE00000003	CDS	102583127	102583192	+
GWHAAZE00000003	CDS	102583308	102583376	+
GWHAAZE00000003	CDS	102583470	102583490	+

Transcript Sequence
>GWHTAAZE013441 AAATACAGGAGGACTGGACTGGAGGAGGTTGAAGAATTCAATTAAAGTTTTTCATCAGTAAAAAAAGCTTCAGAGCACCCAAAAGTAGAACTGAATCTGAAGTCAATGAGCAGCCGGGGCTTTTTGTGCTGTTCAATCTTGTAGCTTCGGTTTATGCAAGTTCATTGGTCCACTGTTTTAAGAGGGGATTTGGTTCTGGCTTCTTTGGCTTTTCTTGTCAAAGAGAGGTGGATAACTGGGTATGTCTGGCCATGATAAATTTGAGCCAGAAAACAGAAATGAGGATCCAGTGGACTACAATTTTCTCACCAACACATCAATGGGAATGATTCCCATAACCAATCCCATGTCAGTTTGTAAAGGAGATCTGTTAGAGTCCTCTACTTGTTCCTCTGCCTCCATGGTGGACTCATTTTGCCCCATCATTTGGGACCAGCCCCACAATCCCCCGCAGGACCTAGCTTTCTGTGACATTAATACGCAAAACAATGCTAGTACCTTGAGCATGCTTGGATTTAGAAAAACTGGTTTTGGCCCTCCAAGAATGGGTATTGAGAGAACAGTTGTTGATATGGGTTGGACTCCACCGAATTCATTGTTGAAAGGGGGAATGCTTGTCCCACCAAGTACATCTAGGATGCTGCCCCAGGCTTTGTCTCAGATTCCAGCTGATTCGGGCTTCATTGAGCGAGCAGCTAGGTTCTCGTGCTTTAATGGAGGGAATTTTGGTGATATGATGAACCCTTTTGGTGTTCTTGAATCTGTGAGTACTTATTCTAGGGGTGTGGCATCAATGCAAGGGCCAAATGAGATGAACAAGGTTGAAGGTTGTAAAGATAATTCTTTCTCGGTTCAGCGCGGGGCTATTGAAGGGAGCCCACTCGATAATCAGAAGAGGAGTGAGAGCTTTGTGAGGTCTCTTGATGAAGCAAAACAAGTTGTTGGTGTGTCTGGTAATGAGTCTGGTGAAGCAGAATTTAGTGGCGGTGGTGGTGGTCAAGAGGAGCAATCACTATTTGAGGGTGCAGATAGGGAAACTTCTGCCAGGGGGCATAGCCCAAACAAAAGGAAAAGAAGTGAGAAGGATAATGAACTTGATCAAAGTAAGGGTACCCCACAAACACCTGTGGAAGCTATGAAGGATAGCGTCGAAATTCAGAAGAAAGGAGACCAAAACCCAAATTCAACAACCAATAGGCCCAGTGGAAAAAATGGTAAGCAGGGAGCAGATCCACTCAAGGAAGATTACATACATATTAGAGCACGAAGAGGCCAGGCGACAAACAGCCACAGTCTTGCAGAGAGAGTGAGAAGGGAAAAGATCAGTGAGAGGATGAAGTTTCTTCAGGACCTTGTACCTGGTTGCAGCAAGGTAACAGGGAAAGCAGTTATGCTAGATGAAATCATTAACTACGTACAATCACTACAACGACAAGTTGAGAATGTGAAACAAAGTTCATAG

Network for GWHGAAZE013427

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00010.27	HLH	348	396	4.70E-06

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0046983	molecular_function	protein dimerization activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	23.257
	SRR3591706	second leaf	27.528
	SRR3591707	mature leaf	27.154
	SRR3591708	Shoot apex	38.989
	SRR3591709	Stem	13.971
	SRR3591710	White floral bud	8.771
	SRR3591711	White flower	8.357
	SRR3591712	Green floral bud	14.007
	SRR3591713	Yellow flower	2.321
SRP173429	SRR8316895	Juvenile bud stage	12.419
	SRR8316896	Juvenile bud stage	12.576
	SRR8316897	Juvenile bud stage	6.126
	SRR8316894	Third green stage	7.384
	SRR8316900	Third green stage	18.515
	SRR8316901	Third green stage	14.074
	SRR8316898	Complete white stage	2.441
	SRR8316899	Complete white stage	18.496
	SRR8316903	Complete white stage	4.873
	SRR8316902	Silver flowering stage	0.861
	SRR8316904	Silver flowering stage	1.869
	SRR8316905	Silver flowering stage	0.961
	SRR8316906	Gold flowering stage	1.709
	SRR8316907	Gold flowering stage	2.105
	SRR8316908	Gold flowering stage	3.512
SRP132670	SRR6706286	Control	21.188
	SRR6706287	Light intensity 50%	21.811
	SRR6706288	Light intensity 20%	22.031
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.596
	CNS0095593	Slightly white alabastrum(diploid) 2	8.031
	CNS0095594	Slightly white alabastrum(diploid) 3	7.133
	CNS0095595	Whole white alabastrum(diploid) 2	7.973
	CNS0095596	Whole white alabastrum(diploid) 3	5.493
	CNS0095597	Whole white alabastrum(diploid) 4	5.483
	CNS0095598	Silvery flower (diploied) 1	12.864
	CNS0095599	Silvery flower (diploied) 2	7.623
	CNS0095600	Silvery flower (diploied) 3	5.735
	CNS0095601	Golden flower (diploid) 1	9.213
	CNS0095602	Golden flower (diploid) 2	8.320
	CNS0095603	Golden flower (diploid) 3	9.220
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.996
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.694
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.442
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.464
	CNS0095608	Whole white alabastrum(tetraploid) 2	3.170
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.865
	CNS0095610	Silvery flower (tetraploid) 1	4.938
	CNS0095611	Silvery flower (tetraploid) 2	8.139
	CNS0095612	Silvery flower (tetraploid) 3	2.721
	CNS0095613	Golden flower (tetraploid) 1	1.442
	CNS0095614	Golden flower (tetraploid) 2	3.011
	CNS0095615	Golden flower (tetraploid) 3	1.209
CRA001975	CRR073297	Stem 1	30.244
	CRR073298	Stem 2	29.806
	CRR073299	Stem 3	28.394
	CRR073300	Leaf 1	24.578
	CRR073301	Leaf 2	23.298
	CRR073302	Leaf 3	22.788
	CRR073303	Juvenile bud 1	12.228
	CRR073304	Juvenile bud 2	8.627
	CRR073305	Juvenile bud 3	20.353
	CRR073306	Third green 1	0.441
	CRR073307	Third green 2	0.635
	CRR073308	Third green 3	0.924
	CRR073309	Second white 1	0.318
	CRR073310	Second white 2	0.537
	CRR073311	Second white 3	0.519
	CRR073312	Silver flowering 1	0.157
	CRR073313	Silver flowering 2	0.552
	CRR073314	Silver flowering 3	0.173
	CRR073315	Gold flowering 1	21.739
	CRR073316	Gold flowering 2	33.619
	CRR073317	Gold flowering 3	21.919
	CRR073318	Tawny withering 1	11.722
	CRR073319	Tawny withering 2	9.334
	CRR073320	Tawny withering 3	13.689