Gene detail

Detail information of GWHGAAZE013423

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011077788.1	PREDICTED: chaperonin 60 subunit beta 4, chloroplastic isoform X1 [Sesamum indicum]
Swissprot	tr\|Q9C667\|CPNB4_ARATH	Chaperonin 60 subunit beta 4, chloroplastic (Precursor)
trEMBL	tr\|F6HGG3\|F6HGG3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB51164.1}
TAIR10	AT1G26230.1	TCP-1/cpn60 chaperonin family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102442213	102445812	-
GWHAAZE00000003	mRNA	102442213	102445812	-
GWHAAZE00000003	exon	102442213	102442443	-
GWHAAZE00000003	exon	102442814	102442906	-
GWHAAZE00000003	exon	102443043	102443135	-
GWHAAZE00000003	exon	102443290	102443394	-
GWHAAZE00000003	exon	102443481	102443552	-
GWHAAZE00000003	exon	102443665	102443742	-
GWHAAZE00000003	exon	102443941	102444110	-
GWHAAZE00000003	exon	102444284	102444518	-
GWHAAZE00000003	exon	102444605	102444847	-
GWHAAZE00000003	exon	102444961	102445056	-
GWHAAZE00000003	exon	102445154	102445291	-
GWHAAZE00000003	exon	102445427	102445552	-
GWHAAZE00000003	exon	102445663	102445812	-
GWHAAZE00000003	CDS	102445663	102445812	-
GWHAAZE00000003	CDS	102445427	102445552	-
GWHAAZE00000003	CDS	102445154	102445291	-
GWHAAZE00000003	CDS	102444961	102445056	-
GWHAAZE00000003	CDS	102444605	102444847	-
GWHAAZE00000003	CDS	102444284	102444518	-
GWHAAZE00000003	CDS	102443941	102444110	-
GWHAAZE00000003	CDS	102443665	102443742	-
GWHAAZE00000003	CDS	102443481	102443552	-
GWHAAZE00000003	CDS	102443290	102443394	-
GWHAAZE00000003	CDS	102443043	102443135	-
GWHAAZE00000003	CDS	102442814	102442906	-
GWHAAZE00000003	CDS	102442213	102442443	-

Transcript Sequence
>GWHTAAZE013437 ATGGCGTGTTCTCTCACCCCTTTACCCACAATTTCTTCCCCCAAATCGACCCTTTTTACGAAAAGACCCATCGCTGCAATGTTGAACACAAAAGCCATGGCTAAAGAACTTCACTTTAACCACGATGGCTCAACTACAAAGAAACTTTTGGCAGGGGTAGACATGGTAGCAGAGCTGGTTGGGGTAACTTTGGGTCCAAAAGGAAGGAATGTAGTGTTGCAGAATAAGTATGGACCTCCCAAGATTGTTAATGATGGAGAAACTGTTCTTAAAGAGATTGAACTAGAGGACCCTCTAGAGAATATTGGTGTAAAATTGGTGAGGCAAGCCGGTGCAAAAACAAATGATCTTGCAGGCGATGGTTCCACTACATCTATTTTGCTTGCTCAAGGTCTAATTGCTGAGGGTGTGAAGGTTATTGCAGCTGGCATTAATCCTATCCAGATTTCCCGGGGCATCGAGAAAACAGCTATAGCCTTAGTCTCTGAGCTCAAGCTTATGGCCAGAGAGGTTAAAGATCATGAGATTGCAGCTGTTGCTGCTGTTAGTGCCGGTAATGACTATGCAGTGGGAAACATGATTTCTGATGCTCTTCAACGAGTGGGAAGGAGGGGCGTAGTCACAATAGAGAAAGGGAATTCTGTTGAGAACAATCTAGAGATTGTAGAGGGAATGCAATTTGATCGTGGATACTTATCTCATTACTTTGTTACTGATAGACGAACGAGGAAAGCAGAGTTCCAGGATTGCAAGTTGCTTCTGGTTGACAAAAAAATCACCAACCCGAAGGAGATGTTTAAAATTTTGGACAATGCAGTTAAGGAGAAGTACCCAATTGTGATAATCGCAGAGGGCATTGAGCAGGAAGCTCTGGCTCCAGTAATTAGGAACAAACTCAGACACGTGCTTAAGGCAGCTGCTATTAAAGCTCCTGCCTTTGGTGAACGAAAGAGCCAGTACCTAGATGACATTGCTATCTTGACAGGAGGGACTGTAATCAGAGATGACATGGGGTTGACACTTGAAAAGGCTGACAAAGACATTTTGGGGACTGCTACTAAGGTGGTGATAACTAAAGATTCTACACTAATAGTTACTGATGGGAGCACTCAAGAGGCTGTTACGAAGAGGGTTACTCAGCTCCAAAGGCTTGTTGAGAACACTGAGGAAAATTTTCAAAAGAAAATACTGAATGAAAGAATTGCGAGATTATCCGGGGGAATTGCTATTCTTCAGGTAGGAGCACAAACACAAATTGAGTTAAAGGATAAACAACTGAGGATTGAAGATGCCGTGAATGCAACCAAGGCAGCTATTGAGGAAGGAGTTGTAGTTGGTGGTGGCTGTTGTCTTTTGAGGCTATCTCTCAAGGTGGATGGTATCAAAGAATTTTTGGACAACGAAGAACAAAAGATAGGAGCCGACATCTTTAAAAGAGCTCTGGCCTATCCTGCAAGACAGATAGCTAGAAATGCTGGTGTAAACGGGAACATTGTTATAGAAAAGGTTCTTTCTGTCGATGATACAAGGTATGGATACAATGCTGCAACAGCCCAATATGAAAATTTGATGGCTGCTGGAATCCTGGATCCATCAAAGGTAGTAAGATGTTGTTTGGAGAATGCAGCATCAGTTGCCAAGACCTTTTTAACATCTAATGCTGTAGTCATTGACATAACTGAAACAGTGCCAAACAGAATGAGAAAACCAGTGCCAACGTCAGGTAACACAAAATTAACAGTTTCACCCCAAAGAAAGATATGTTATATATCGAAAATTAAAACGTTCTTCTTGATTCAGGGATTGAACCCATTGGCATTTAGTTATTGA

Network for GWHGAAZE013423

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00118.25	Cpn60_TCP1	56	558	6.00E-99

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04077	groEL, HSPD1	RNA degradation	map03018
K04077	groEL, HSPD1	Longevity regulating pathway - worm	map04212

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0042026	biological_process	protein refolding
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.282
	SRR3591706	second leaf	14.668
	SRR3591707	mature leaf	12.079
	SRR3591708	Shoot apex	20.800
	SRR3591709	Stem	2.914
	SRR3591710	White floral bud	2.622
	SRR3591711	White flower	2.758
	SRR3591712	Green floral bud	1.733
	SRR3591713	Yellow flower	0.396
SRP173429	SRR8316895	Juvenile bud stage	5.042
	SRR8316896	Juvenile bud stage	5.336
	SRR8316897	Juvenile bud stage	2.836
	SRR8316894	Third green stage	2.971
	SRR8316900	Third green stage	5.309
	SRR8316901	Third green stage	4.633
	SRR8316898	Complete white stage	0.861
	SRR8316899	Complete white stage	2.325
	SRR8316903	Complete white stage	1.499
	SRR8316902	Silver flowering stage	0.446
	SRR8316904	Silver flowering stage	0.855
	SRR8316905	Silver flowering stage	0.458
	SRR8316906	Gold flowering stage	0.930
	SRR8316907	Gold flowering stage	0.691
	SRR8316908	Gold flowering stage	0.818
SRP132670	SRR6706286	Control	3.456
	SRR6706287	Light intensity 50%	3.396
	SRR6706288	Light intensity 20%	3.484
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.466
	CNS0095593	Slightly white alabastrum(diploid) 2	3.399
	CNS0095594	Slightly white alabastrum(diploid) 3	2.439
	CNS0095595	Whole white alabastrum(diploid) 2	3.691
	CNS0095596	Whole white alabastrum(diploid) 3	2.385
	CNS0095597	Whole white alabastrum(diploid) 4	2.098
	CNS0095598	Silvery flower (diploied) 1	12.654
	CNS0095599	Silvery flower (diploied) 2	8.002
	CNS0095600	Silvery flower (diploied) 3	1.964
	CNS0095601	Golden flower (diploid) 1	7.095
	CNS0095602	Golden flower (diploid) 2	3.733
	CNS0095603	Golden flower (diploid) 3	3.926
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.816
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.213
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.192
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.801
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.716
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.782
	CNS0095610	Silvery flower (tetraploid) 1	0.921
	CNS0095611	Silvery flower (tetraploid) 2	1.623
	CNS0095612	Silvery flower (tetraploid) 3	0.646
	CNS0095613	Golden flower (tetraploid) 1	0.092
	CNS0095614	Golden flower (tetraploid) 2	1.102
	CNS0095615	Golden flower (tetraploid) 3	0.193
CRA001975	CRR073297	Stem 1	9.277
	CRR073298	Stem 2	8.337
	CRR073299	Stem 3	6.184
	CRR073300	Leaf 1	3.351
	CRR073301	Leaf 2	3.805
	CRR073302	Leaf 3	2.141
	CRR073303	Juvenile bud 1	1.871
	CRR073304	Juvenile bud 2	1.003
	CRR073305	Juvenile bud 3	1.901
	CRR073306	Third green 1	0.347
	CRR073307	Third green 2	0.044
	CRR073308	Third green 3	0.221
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.348
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.003
	CRR073313	Silver flowering 2	0.032
	CRR073314	Silver flowering 3	0.055
	CRR073315	Gold flowering 1	4.670
	CRR073316	Gold flowering 2	11.338
	CRR073317	Gold flowering 3	4.405
	CRR073318	Tawny withering 1	1.627
	CRR073319	Tawny withering 2	0.735
	CRR073320	Tawny withering 3	1.380