Gene detail

Detail information of GWHGAAZE013422

Functional Annotation

Database	Orthologs	Annotation
Nr	CBI40010.3	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q9ZPI1\|SYK_ARATH	Lysine--tRNA ligase
trEMBL	tr\|F6I4L4\|F6I4L4_VITVI	Lysine--tRNA ligase {ECO:0000256\|RuleBase:RU003748}
TAIR10	AT3G11710.1	lysyl-tRNA synthetase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102435097	102439831	+
GWHAAZE00000003	mRNA	102435097	102439831	+
GWHAAZE00000003	exon	102435097	102435189	+
GWHAAZE00000003	exon	102435317	102435464	+
GWHAAZE00000003	exon	102435561	102435654	+
GWHAAZE00000003	exon	102437157	102437233	+
GWHAAZE00000003	exon	102437719	102437843	+
GWHAAZE00000003	exon	102437931	102437951	+
GWHAAZE00000003	exon	102438045	102438170	+
GWHAAZE00000003	exon	102438282	102438498	+
GWHAAZE00000003	exon	102438685	102438781	+
GWHAAZE00000003	exon	102438884	102439040	+
GWHAAZE00000003	exon	102439135	102439259	+
GWHAAZE00000003	exon	102439354	102439453	+
GWHAAZE00000003	exon	102439537	102439680	+
GWHAAZE00000003	exon	102439778	102439831	+
GWHAAZE00000003	five_prime_UTR	102435097	102435129	+
GWHAAZE00000003	CDS	102435130	102435189	+
GWHAAZE00000003	CDS	102435317	102435464	+
GWHAAZE00000003	CDS	102435561	102435654	+
GWHAAZE00000003	CDS	102437157	102437233	+
GWHAAZE00000003	CDS	102437719	102437843	+
GWHAAZE00000003	CDS	102437931	102437951	+
GWHAAZE00000003	CDS	102438045	102438170	+
GWHAAZE00000003	CDS	102438282	102438498	+
GWHAAZE00000003	CDS	102438685	102438781	+
GWHAAZE00000003	CDS	102438884	102439040	+
GWHAAZE00000003	CDS	102439135	102439259	+
GWHAAZE00000003	CDS	102439354	102439453	+
GWHAAZE00000003	CDS	102439537	102439680	+
GWHAAZE00000003	CDS	102439778	102439831	+

Transcript Sequence
>GWHTAAZE013436 AAAAAGGAGAACATTATTTTCTAGACCGCTGCTATGGCAAGCTCACAGGTTCAGAAGGCCCAAGCTGTAGATGATGAGGACATGAACCAAACAGTTGAAAGCACTTGCAGCTCAGAAAGAAGCCTGAAAAACCCATACCCTCACAAATTCCATGTTTCAATGTCTGTCCTAGAATCTGCTGAGGAGTATGGAGGCTTAAATAGTGGGGATCATCTCAATGACATGGAAGAATCTTTGGCAGGGCGAATTATGCTTAAACGATCTTCATCATCAAAGCTGTTATTTTTAGATTTGCATGGTGAGGGTGCCAAAGTCCAAGCAATTGGCAACGCAAGCCTCATGGATGAAGACGTGTTTTCCAAGCTTTCAGGTGTGAAGCGAGGAGATGATGTTGGAATTGTTGGGTTTCCAGGGAAGAGTAAAACAGGAGAGTTGAGTATCTTTGCGAAACCATTCATAGTGTTATCCCATTGTCTCTATATGTTGCCAAGACCAAGGGCAAAAGCTGCTCCTGGTTCAGAAAACGCCGATGTGAAGAGGTATGGGTTCCATGAAGTGGAAACTAGGTATCTTCAACGCTCTCTGGATTTGATGTTGAACACAGAGGTACAACAGATATTTAAGACGCGGGCAAAGATCATATCTTATATTAGACTATTCCTTGACAATCTAGATTTTTTGGAGGTTGAAACACCCATGATGAACATGATTATGGGAGGAGCAACGGTCTGTCCTTTTGTAACCCACCACAATGACCTGAACATGAAGCTATATATGAGGATTGCTCCAGAGCTTTATCTTAAGGAGCTTGTTGTTATTGGACTAGACCGTGTTTACGAGATAGGAAAACAATTCCTGAACGAGGGAATTGACTTGACACATAATCCAGAATTCACTACATGGATGGTGAAAGAACTTACTGGTGGCTATATAGTTAAGTATCACGCAAATGGGTTAGAAAATGACCCCATTGAAATTAACTTTACTCTTCCTTTCAGAAGGATTGATATGATAGAAGAGTTGGAGAAGATGGCAAATCTTAGCATACCAAAGGACCTTGCGGGGGATGAAGCCAACAAATATTTGTTAGATGCTTGCACAAAGTTCGATATAAAATGCCCTCCACCTCAAACAACATCACGTTTGTTGAACAAACTTGTGGGGAACTTTCTGGAGGAGACTTGTGTATACCTGGCTTTCATCATCAACCATCCAGAAATAACGAGTCCATTGGCAAAGTGGCATAGATCAAAACCAGGCCTGATTGAACGTTTTGAATTTGTTTCGAACTTCTGTTCGATAACTGTTCAGTTCTGCAATGCATACACGGAATTGAATGATCCCGTGGTACAGCGCCAGTGGTTTGCTGATCAACTTAAGGACTGGCAATCAGGGGATGATGAAGCCACGCCCTTGGACGAAACATTCTGTATGGCTCTTGAATATGGTTTGCCTTCAACTGGCCGTTGGGGATTGGGTGTTGATTGTCTTACAATGATTTTGACAGATTCACAAAACATCAAGGAAGTACTACTCTTTCCCGCCATGAAACCAAAAGGTGCACATTCTAATACATAA

Network for GWHGAAZE013422

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01336.26	tRNA_anti-codon	67	139	1.10E-07
PF00152.21	tRNA-synt_2	175	505	2.40E-44

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K04567	KARS, lysS	Aminoacyl-tRNA biosynthesis	map00970

Gene Ontology

GO term	Ontology	Name
GO:0006418	biological_process	tRNA aminoacylation for protein translation
GO:0006430	biological_process	lysyl-tRNA aminoacylation
GO:0005737	cellular_component	cytoplasm
GO:0000166	molecular_function	nucleotide binding
GO:0004812	molecular_function	aminoacyl-tRNA ligase activity
GO:0005524	molecular_function	ATP binding
GO:0003676	molecular_function	nucleic acid binding
GO:0004824	molecular_function	lysine-tRNA ligase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.863
	SRR3591706	second leaf	0.451
	SRR3591707	mature leaf	0.169
	SRR3591708	Shoot apex	1.761
	SRR3591709	Stem	0.635
	SRR3591710	White floral bud	0.473
	SRR3591711	White flower	0.495
	SRR3591712	Green floral bud	0.533
	SRR3591713	Yellow flower	0.317
SRP173429	SRR8316895	Juvenile bud stage	1.048
	SRR8316896	Juvenile bud stage	1.145
	SRR8316897	Juvenile bud stage	0.372
	SRR8316894	Third green stage	0.568
	SRR8316900	Third green stage	1.084
	SRR8316901	Third green stage	0.718
	SRR8316898	Complete white stage	0.219
	SRR8316899	Complete white stage	0.718
	SRR8316903	Complete white stage	0.415
	SRR8316902	Silver flowering stage	0.508
	SRR8316904	Silver flowering stage	0.435
	SRR8316905	Silver flowering stage	0.215
	SRR8316906	Gold flowering stage	0.485
	SRR8316907	Gold flowering stage	0.926
	SRR8316908	Gold flowering stage	0.415
SRP132670	SRR6706286	Control	0.381
	SRR6706287	Light intensity 50%	0.382
	SRR6706288	Light intensity 20%	0.238
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.398
	CNS0095593	Slightly white alabastrum(diploid) 2	0.831
	CNS0095594	Slightly white alabastrum(diploid) 3	1.195
	CNS0095595	Whole white alabastrum(diploid) 2	0.703
	CNS0095596	Whole white alabastrum(diploid) 3	0.476
	CNS0095597	Whole white alabastrum(diploid) 4	0.571
	CNS0095598	Silvery flower (diploied) 1	0.999
	CNS0095599	Silvery flower (diploied) 2	0.760
	CNS0095600	Silvery flower (diploied) 3	0.126
	CNS0095601	Golden flower (diploid) 1	1.139
	CNS0095602	Golden flower (diploid) 2	0.385
	CNS0095603	Golden flower (diploid) 3	0.346
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.813
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.913
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.800
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.323
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.374
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.132
	CNS0095610	Silvery flower (tetraploid) 1	0.134
	CNS0095611	Silvery flower (tetraploid) 2	0.139
	CNS0095612	Silvery flower (tetraploid) 3	0.296
	CNS0095613	Golden flower (tetraploid) 1	0.428
	CNS0095614	Golden flower (tetraploid) 2	0.333
	CNS0095615	Golden flower (tetraploid) 3	0.147
CRA001975	CRR073297	Stem 1	1.059
	CRR073298	Stem 2	0.773
	CRR073299	Stem 3	0.128
	CRR073300	Leaf 1	0.804
	CRR073301	Leaf 2	0.487
	CRR073302	Leaf 3	0.076
	CRR073303	Juvenile bud 1	0.052
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.033
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.089
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.060
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.526
	CRR073316	Gold flowering 2	0.083
	CRR073317	Gold flowering 3	0.053
	CRR073318	Tawny withering 1	0.075
	CRR073319	Tawny withering 2	0.614
	CRR073320	Tawny withering 3	0.723