Detail information of GWHGAAZE013421


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008339734.10PREDICTED: ASC1-like protein [Malus domestica]
Swissprottr|Q8W4Y5|ASCL_SOLLC4E-177ASC1-like protein
trEMBLtr|A0A067K8T5|A0A067K8T5_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP31433.1}
TAIR10AT1G13580.32E-125LAG1 longevity assurance homolog 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene102426313102428959-
GWHAAZE00000003mRNA102426313102428959-
GWHAAZE00000003exon102428760102428959-
GWHAAZE00000003exon102427487102427716-
GWHAAZE00000003exon102427208102427363-
GWHAAZE00000003exon102426828102427013-
GWHAAZE00000003exon102426313102426499-
GWHAAZE00000003five_prime_UTR102428898102428959-
GWHAAZE00000003CDS102428760102428897-
GWHAAZE00000003CDS102427487102427716-
GWHAAZE00000003CDS102427208102427363-
GWHAAZE00000003CDS102426828102427013-
GWHAAZE00000003CDS102426313102426499-
Transcript Sequence

Network for GWHGAAZE013421

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03798.17TRAM_LAG1_CLN8742801.90E-39
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K23727CERS5_6, LASS5_6 Metabolic pathways map01100
Sphingolipid metabolismmap00600
Sphingolipid signaling pathwaymap04071

Gene Ontology

GO term OntologyName
GO:0016021cellular_componentintegral component of membrane

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf27.909
SRR3591706second leaf17.374
SRR3591707mature leaf11.799
SRR3591708Shoot apex21.509
SRR3591709Stem17.365
SRR3591710White floral bud33.337
SRR3591711White flower32.125
SRR3591712Green floral bud32.864
SRR3591713Yellow flower29.685
SRP173429 SRR8316895Juvenile bud stage 21.517
SRR8316896Juvenile bud stage 27.930
SRR8316897Juvenile bud stage 12.319
SRR8316894Third green stage 12.981
SRR8316900Third green stage 35.754
SRR8316901Third green stage 36.116
SRR8316898Complete white stage 23.675
SRR8316899Complete white stage 34.858
SRR8316903Complete white stage 33.887
SRR8316902Silver flowering stage21.728
SRR8316904Silver flowering stage33.299
SRR8316905Silver flowering stage14.704
SRR8316906Gold flowering stage 45.754
SRR8316907Gold flowering stage 44.091
SRR8316908Gold flowering stage 40.607
SRP132670SRR6706286Control16.729
SRR6706287Light intensity 50%18.882
SRR6706288Light intensity 20%20.474
CNP0000432CNS0095592Slightly white alabastrum(diploid) 130.297
CNS0095593Slightly white alabastrum(diploid) 223.793
CNS0095594Slightly white alabastrum(diploid) 329.970
CNS0095595Whole white alabastrum(diploid) 227.845
CNS0095596Whole white alabastrum(diploid) 324.727
CNS0095597Whole white alabastrum(diploid) 422.875
CNS0095598Silvery flower (diploied) 118.267
CNS0095599Silvery flower (diploied) 215.677
CNS0095600Silvery flower (diploied) 332.631
CNS0095601Golden flower (diploid) 113.654
CNS0095602Golden flower (diploid) 229.148
CNS0095603Golden flower (diploid) 325.819
CNS0095604Slightly white alabastrum(tetraploid) 134.161
CNS0095605Slightly white alabastrum(tetraploid) 234.515
CNS0095606Slightly white alabastrum(tetraploid) 336.758
CNS0095607Whole white alabastrum(tetraploid) 125.127
CNS0095608Whole white alabastrum(tetraploid) 224.266
CNS0095609Whole white alabastrum(tetraploid) 331.856
CNS0095610Silvery flower (tetraploid) 130.384
CNS0095611Silvery flower (tetraploid) 221.681
CNS0095612Silvery flower (tetraploid) 333.389
CNS0095613Golden flower (tetraploid) 116.763
CNS0095614Golden flower (tetraploid) 229.874
CNS0095615Golden flower (tetraploid) 317.412
CRA001975CRR073297Stem 113.297
CRR073298Stem 211.725
CRR073299Stem 39.869
CRR073300Leaf 111.988
CRR073301Leaf 210.914
CRR073302Leaf 38.781
CRR073303Juvenile bud 110.018
CRR073304Juvenile bud 211.394
CRR073305Juvenile bud 39.937
CRR073306Third green 116.123
CRR073307Third green 213.906
CRR073308Third green 313.738
CRR073309Second white 111.046
CRR073310Second white 215.637
CRR073311Second white 314.117
CRR073312Silver flowering 18.432
CRR073313Silver flowering 28.243
CRR073314Silver flowering 310.571
CRR073315Gold flowering 14.734
CRR073316Gold flowering 27.764
CRR073317Gold flowering 33.987
CRR073318Tawny withering 18.399
CRR073319Tawny withering 29.552
CRR073320Tawny withering 310.798