Gene detail

Detail information of GWHGAAZE013409

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010044308.1	PREDICTED: phosphoenolpyruvate carboxylase 4 [Eucalyptus grandis]
Swissprot	tr\|Q8GVE8\|CAPP4_ARATH	Phosphoenolpyruvate carboxylase 4
trEMBL	tr\|A0A059D6N8\|A0A059D6N8_EUCGR	Uncharacterized protein {ECO:0000313\|EMBL:KCW86388.1}
TAIR10	AT1G68750.1	phosphoenolpyruvate carboxylase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	102226942	102238924	+
GWHAAZE00000003	mRNA	102226942	102238924	+
GWHAAZE00000003	exon	102226942	102227116	+
GWHAAZE00000003	exon	102227270	102227283	+
GWHAAZE00000003	exon	102227677	102227840	+
GWHAAZE00000003	exon	102228352	102228466	+
GWHAAZE00000003	exon	102228589	102228666	+
GWHAAZE00000003	exon	102228789	102228857	+
GWHAAZE00000003	exon	102228937	102229015	+
GWHAAZE00000003	exon	102229094	102229170	+
GWHAAZE00000003	exon	102230805	102230900	+
GWHAAZE00000003	exon	102231289	102231430	+
GWHAAZE00000003	exon	102232321	102232452	+
GWHAAZE00000003	exon	102233801	102233904	+
GWHAAZE00000003	exon	102234031	102234291	+
GWHAAZE00000003	exon	102235009	102235134	+
GWHAAZE00000003	exon	102235293	102235394	+
GWHAAZE00000003	exon	102235474	102235620	+
GWHAAZE00000003	exon	102236274	102236372	+
GWHAAZE00000003	exon	102236515	102236603	+
GWHAAZE00000003	exon	102237345	102237471	+
GWHAAZE00000003	exon	102237555	102237761	+
GWHAAZE00000003	exon	102238100	102238924	+
GWHAAZE00000003	CDS	102226942	102227116	+
GWHAAZE00000003	CDS	102227270	102227283	+
GWHAAZE00000003	CDS	102227677	102227840	+
GWHAAZE00000003	CDS	102228352	102228466	+
GWHAAZE00000003	CDS	102228589	102228666	+
GWHAAZE00000003	CDS	102228789	102228857	+
GWHAAZE00000003	CDS	102228937	102229015	+
GWHAAZE00000003	CDS	102229094	102229170	+
GWHAAZE00000003	CDS	102230805	102230900	+
GWHAAZE00000003	CDS	102231289	102231430	+
GWHAAZE00000003	CDS	102232321	102232452	+
GWHAAZE00000003	CDS	102233801	102233904	+
GWHAAZE00000003	CDS	102234031	102234291	+
GWHAAZE00000003	CDS	102235009	102235134	+
GWHAAZE00000003	CDS	102235293	102235394	+
GWHAAZE00000003	CDS	102235474	102235620	+
GWHAAZE00000003	CDS	102236274	102236372	+
GWHAAZE00000003	CDS	102236515	102236603	+
GWHAAZE00000003	CDS	102237345	102237471	+
GWHAAZE00000003	CDS	102237555	102237761	+
GWHAAZE00000003	CDS	102238100	102238924	+

Transcript Sequence
>GWHTAAZE013423 ATGACGGACATAACCGACGATATTGCAGAGGAAATCTCGTTCCAGAGCTTCGATGATGACTTCAAGCTCCTCGGTAGCCTCCTCAACGACGTTTTGCAGCGAGAAGTCGGAAGCCAATTCATGGAGAAAGTTGAAAGAACTCGAATTCTAGCTCAGGTCCACTTTAATTCTCTCTATGCGAATGTTTCAAGTGCATGTAACATGAGAGCTGCGGGGATTGAAGACACTGCTGAGCTCCTTGAGAAGCAACTTGCATCAGAATTATCGAAAATGACATTAGAGGAAGCATTGACCATTGCTAGAGCTTTCAGTCAGTATCTTAGTTTGATGGGAATTGCCGAAACGCATCACAGGGTTTGCAAGGCCCCGGATGCGGCGCATTTATCAAAATCTTGTGATGATACTTTCAGTCAATTGGTTCAAGGTGGATGTCCCCCAGATGAGCTTTACAACAATGTTTGCAAGCAGGAGGTTGAGATTGTTCTCACTGCGCATCCTACTCAGATAAACAGGCGTACTTTACAATACAAACACATTAGAATTGCACATCTTCTAGAGTATAATGACCGTCCTGATCTTGGGCACGAGGATCGAGAAATGCTGATAGAAGATCTGGTGAGAGAGATCACTTCCATATGGCAGACAGACGAACTTAGGCGACACAAGCCTACACCAGTAGATGAAGCTAAAGCTGGCTTACACATTGTGGAGCAGTCTCTCTGGAAAGCTGTACCTCACTATTTACGTCGTGTCAGCAATGCTCTAAAGAAGCATACTGGAAGGCCACTTCCATTGACATGCACGCCAATAAAATTTGGATCTTGGATGGGGGGTGATAGAGATGGAAATCCAAATGTAACGGCAAAGGTTACAAAAGATGTATCTCTTTTATCCAGGTGGATGGCTATAGACCTTTATGAAAGGGAAATCGATAACCTCAGATTTGAACTTTCTATTAACAAGGCCAGCGATAGATTATCAAGATTGGCACATGAAATTCTTGAAAAAGAAACTTCTTCTGAGGTTCGGAATGAGAGTTGGAACCAACCACTACACTGGAGTCAATCAAAAAATCACAGCCAACATTCTTCATCCATACCTTCACAACTTCCAGCTAGAGCTGATATACCCTCTTGCGCAGAATGCAACAACGTGGAATCTCATTGTCCTCGACTAGAGCTTCCTGGGACAGAGTACATGCCATTAAACCGCCAGGTGAAGCAAGTCTTAGGACATCTGTTATTTGATGGTCAGGCTTCTTCAAGAACAAATTCTTCATTCGAGGATTTAAATAGGAATATTAACAAATCAAATGGAAGTGTTAATGGCAATGCCCAGTCGCCTTCAATACCACGTTCTACTTCTAGTCAGCTCCTTGCTCAGAGGAAACTGTTTGCTGAATCTCAGAAAGGACGTAGCAGCTTCAAGAAGCTTCTGGAACCAAGCCTGTCACAGCGACCTGATATTGCTCCTTACAGAATTGTCCTTGGGGATGTAAAAGAAAAGCTCGTTAAGACACGGAAGCGGCTGGAACTTCTTCTTGAGGATCTTCCCTGTGAACAAGATCCCCGCGATTATTATGAAACATCGGATCAGTTTTTGGAACCGCTACTTCTTTGCTATGATTCTTTGCAATCATGTGGATCAGGGCCTCTAGCTGATGGCCGGCTTGCTGACCTAATTAGAAGAGTGTCTACATTTGGGATGGTTTTAATGAAGCTTGACTTGCGTCAGGAATCTGGTAGACATACAGAGACTCTTGATGCAGTTACGAGATATCTGGATATGGGTACGTATAGTGAGTGGGATGAAGAAAAAAGACTTGAATTTCTAACAAAAGAATTGAAAGGGAAGAGGCCTCTAGTTCCTCCAACTATAGAGGTTGCTCCTGATGTTAAAGAAGTACTGGACACCTTCCGTGTTGCTGCTGAGTTGGGAAGCGATTCACTAGGAGCCTATGTAATTTCTATGGCTTCAAATGCAAGTGATGTCCTTGCCGTGGAGCTTTTGCAAAAGGATGCCTGTCATACCATTTCTGGGGAGCAGGGCAAACCATGTACTGGTAAAATGCTACGGGTGGTTCCTCTTTTCGAAACTGTGAAGGATTTGAGAGGTGCTGGCTCAGTGATCAGGAAATTATTATCAATTGATTGGTATCGAGAGCATGTCAAAAAGAACCATAATGGGCACCAAGAGGTGATGGTTGGATATTCTGATTCGGGTAAAGATGCTGGGCGTTTTACAGCTGCATGGGAACTTTACAAGGCCCAGGAGGATGTTGTGGCTGCATGCAATGAATATAGTATTAAAGTTACTCTTTTCCATGGCCGCGGAGGCAGTATTGGTCGTGGTGGTGGTCCCACGTATCTTGCTATTCAATCCCAACCCCCTGGTTCTGTAATGGGTACACTTCGATCAACGGAACAAGGAGAAATGGTGCAGGCCAAGTTTGGGCTACCACAAACAGCCACTCGACAACTAGAAATCTACACTACAGCCGTGCTGCTAGCTACCCTACGCCCTCCACAATCACCTAGAGAAGAAAAATGGCGTAGTCTCATGGACGAAATCTCGAAAATCAGCTGCCAAGCTTACAGGAGCACAGTTTACGAGAACCCCGAATTCATTACTTACTTCCAAGAAGCTACACCACAAGCGGAGCTCGGCTTCCTTAACATAGGAAGTCGCCCTACAAGAAGAAAAAGCTCAATAGGAATCGGCCATCTTCGGGCTATTCCTTGGATATTTGCATGGACCCAAACGAGATTCGTTCTTCCGGCTTGGCTCGGAGTTGGAGCCGGCTTGAAGGGCGTATGTGAAATGGGACATACTGATGAATTACGCGCAATTTACAAGGAATGGCCTTTCTTTCAATCTACAGTCGATCTTATAGAGATGGTTTTAGGGAAAGCGGACATACCCATAGTTAAGCATTATGATGAAGTTCTTGTATCGGAAAGTAGGCGAGGTCTTGGTGACGAACTAAGGAAAGAGCTTTTGTCAACAGAGGAGCAGGTTTTGTTGGTAACTGGGCATGAGAAACTATCTGATAATAACCGAAGCTTGAGGAGGCTTATAGAGAGTAGGCTTCCTTATCTAAATCCGTTGAACATGCTTCAGGTCGAGATATTGAGGAGGTTGAGACGAGACGAAGATAACCATAGACTTAGAGATGCGTTGCTTATTACTATTAATGGGATTGCTGCTGGGATGAGGAATACTGGTTAG

Network for GWHGAAZE013409

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00311.18	PEPcase	156	341	1.50E-57
PF00311.18	PEPcase	454	1075	6.10E-226

Protein Sequence

>GWHPAAZE013416
MTDITDDIAEEISFQSFDDDFKLLGSLLNDVLQREVGSQFMEKVERTRILAQVHFNSLYANVSSACNMRAAGIEDTAELLEKQLASELSKMTLEEALTIARAFSQYLSLMGIAETHHRVCKAPDAAHLSKSCDDTFSQLVQGGCPPDELYNNVCKQEVEIVLTAHPTQINRRTLQYKHIRIAHLLEYNDRPDLGHEDREMLIEDLVREITSIWQTDELRRHKPTPVDEAKAGLHIVEQSLWKAVPHYLRRVSNALKKHTGRPLPLTCTPIKFGSWMGGDRDGNPNVTAKVTKDVSLLSRWMAIDLYEREIDNLRFELSINKASDRLSRLAHEILEKETSSEVRNESWNQPLHWSQSKNHSQHSSSIPSQLPARADIPSCAECNNVESHCPRLELPGTEYMPLNRQVKQVLGHLLFDGQASSRTNSSFEDLNRNINKSNGSVNGNAQSPSIPRSTSSQLLAQRKLFAESQKGRSSFKKLLEPSLSQRPDIAPYRIVLGDVKEKLVKTRKRLELLLEDLPCEQDPRDYYETSDQFLEPLLLCYDSLQSCGSGPLADGRLADLIRRVSTFGMVLMKLDLRQESGRHTETLDAVTRYLDMGTYSEWDEEKRLEFLTKELKGKRPLVPPTIEVAPDVKEVLDTFRVAAELGSDSLGAYVISMASNASDVLAVELLQKDACHTISGEQGKPCTGKMLRVVPLFETVKDLRGAGSVIRKLLSIDWYREHVKKNHNGHQEVMVGYSDSGKDAGRFTAAWELYKAQEDVVAACNEYSIKVTLFHGRGGSIGRGGGPTYLAIQSQPPGSVMGTLRSTEQGEMVQAKFGLPQTATRQLEIYTTAVLLATLRPPQSPREEKWRSLMDEISKISCQAYRSTVYENPEFITYFQEATPQAELGFLNIGSRPTRRKSSIGIGHLRAIPWIFAWTQTRFVLPAWLGVGAGLKGVCEMGHTDELRAIYKEWPFFQSTVDLIEMVLGKADIPIVKHYDEVLVSESRRGLGDELRKELLSTEEQVLLVTGHEKLSDNNRSLRRLIESRLPYLNPLNMLQVEILRRLRRDEDNHRLRDALLITINGIAAGMRNTG

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01595	ppc	Metabolic pathways	map01100
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Pyruvate metabolism	map00620
		Carbon fixation in photosynthetic organisms	map00710
		Carbon fixation pathways in prokaryotes	map00720
		Methane metabolism	map00680

Gene Ontology

GO term	Ontology	Name
GO:0006099	biological_process	tricarboxylic acid cycle
GO:0015977	biological_process	carbon fixation
GO:0008964	molecular_function	phosphoenolpyruvate carboxylase activity
GO:0003824	molecular_function	catalytic activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.960
	SRR3591706	second leaf	44.075
	SRR3591707	mature leaf	85.135
	SRR3591708	Shoot apex	24.030
	SRR3591709	Stem	81.333
	SRR3591710	White floral bud	20.830
	SRR3591711	White flower	37.519
	SRR3591712	Green floral bud	23.458
	SRR3591713	Yellow flower	19.861
SRP173429	SRR8316895	Juvenile bud stage	17.392
	SRR8316896	Juvenile bud stage	22.392
	SRR8316897	Juvenile bud stage	12.161
	SRR8316894	Third green stage	8.476
	SRR8316900	Third green stage	27.905
	SRR8316901	Third green stage	31.423
	SRR8316898	Complete white stage	6.725
	SRR8316899	Complete white stage	15.343
	SRR8316903	Complete white stage	16.520
	SRR8316902	Silver flowering stage	9.647
	SRR8316904	Silver flowering stage	14.798
	SRR8316905	Silver flowering stage	6.723
	SRR8316906	Gold flowering stage	18.974
	SRR8316907	Gold flowering stage	13.906
	SRR8316908	Gold flowering stage	15.329
SRP132670	SRR6706286	Control	25.609
	SRR6706287	Light intensity 50%	21.782
	SRR6706288	Light intensity 20%	19.347
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.218
	CNS0095593	Slightly white alabastrum(diploid) 2	20.781
	CNS0095594	Slightly white alabastrum(diploid) 3	18.900
	CNS0095595	Whole white alabastrum(diploid) 2	28.940
	CNS0095596	Whole white alabastrum(diploid) 3	24.875
	CNS0095597	Whole white alabastrum(diploid) 4	32.171
	CNS0095598	Silvery flower (diploied) 1	53.507
	CNS0095599	Silvery flower (diploied) 2	48.706
	CNS0095600	Silvery flower (diploied) 3	47.995
	CNS0095601	Golden flower (diploid) 1	49.314
	CNS0095602	Golden flower (diploid) 2	57.408
	CNS0095603	Golden flower (diploid) 3	55.305
	CNS0095604	Slightly white alabastrum(tetraploid) 1	33.792
	CNS0095605	Slightly white alabastrum(tetraploid) 2	26.722
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.752
	CNS0095607	Whole white alabastrum(tetraploid) 1	42.798
	CNS0095608	Whole white alabastrum(tetraploid) 2	43.530
	CNS0095609	Whole white alabastrum(tetraploid) 3	52.772
	CNS0095610	Silvery flower (tetraploid) 1	91.414
	CNS0095611	Silvery flower (tetraploid) 2	108.613
	CNS0095612	Silvery flower (tetraploid) 3	13.579
	CNS0095613	Golden flower (tetraploid) 1	41.737
	CNS0095614	Golden flower (tetraploid) 2	69.946
	CNS0095615	Golden flower (tetraploid) 3	19.302
CRA001975	CRR073297	Stem 1	19.628
	CRR073298	Stem 2	17.568
	CRR073299	Stem 3	14.319
	CRR073300	Leaf 1	21.443
	CRR073301	Leaf 2	23.515
	CRR073302	Leaf 3	9.629
	CRR073303	Juvenile bud 1	16.361
	CRR073304	Juvenile bud 2	8.296
	CRR073305	Juvenile bud 3	21.400
	CRR073306	Third green 1	9.026
	CRR073307	Third green 2	7.433
	CRR073308	Third green 3	9.662
	CRR073309	Second white 1	8.950
	CRR073310	Second white 2	16.362
	CRR073311	Second white 3	14.401
	CRR073312	Silver flowering 1	8.948
	CRR073313	Silver flowering 2	11.966
	CRR073314	Silver flowering 3	11.230
	CRR073315	Gold flowering 1	22.435
	CRR073316	Gold flowering 2	33.487
	CRR073317	Gold flowering 3	19.034
	CRR073318	Tawny withering 1	20.032
	CRR073319	Tawny withering 2	16.998
	CRR073320	Tawny withering 3	15.742