Gene detail

Detail information of GWHGAAZE013377

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27037.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P51568\|AFC3_ARATH	3E-48	Serine/threonine-protein kinase AFC3
trEMBL	tr\|F6HFP0\|F6HFP0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50925.1}
TAIR10	AT3G25840.1	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101723609	101727390	+
GWHAAZE00000003	mRNA	101723609	101727390	+
GWHAAZE00000003	exon	101723609	101723699	+
GWHAAZE00000003	exon	101725713	101725869	+
GWHAAZE00000003	exon	101725987	101726278	+
GWHAAZE00000003	exon	101726382	101726496	+
GWHAAZE00000003	exon	101726664	101726827	+
GWHAAZE00000003	exon	101727015	101727089	+
GWHAAZE00000003	exon	101727202	101727390	+
GWHAAZE00000003	CDS	101723609	101723699	+
GWHAAZE00000003	CDS	101725713	101725869	+
GWHAAZE00000003	CDS	101725987	101726278	+
GWHAAZE00000003	CDS	101726382	101726496	+
GWHAAZE00000003	CDS	101726664	101726827	+
GWHAAZE00000003	CDS	101727015	101727089	+
GWHAAZE00000003	CDS	101727202	101727390	+

Transcript Sequence
>GWHTAAZE013391 TGTAATTTTCTCATCCAGGGGAGAGGAGATGGTTTAGCAATTGAAAGGAGCGGCCTTCATGATAATTGGGATGATGCTGAGGGGTACTATAGCTACCGTTTTGGGGAAATCCTTGATGCTCGATATGAAGTTATTGCTGCTCATGGAAAAGGTGTATTTTCAACAGTTGTTCGGGCTAAGGATCTTAAAGCTGGATCCAACGATCCTGAAGAAGTAGCAATAAAAATTATACGTAATAATGACACAATGTACAAGGCTGGTTTGGAAGAGCTGGTCATATTAAAGAAGTTAGTTGGTGCAGACCCAGAGGACAAGCGTCATTGTGTTCGTTTTCTTTCTAGTTTTAAGTACCGGAATCATCTCTGTTTAGTATTTGAATCTCTTCATATGAATCTTCGTGAGGTTTTAAAGAAGTTTGGCCGTAATATTGGACTTAAACTAACTGCTGTGAGAGCGTATGCAAAGCAACTCTTTATTGCGCTGAAGCATCTCAGAAACTGTGGTGTTCTTCACTGTGACATTAAACCAGACAACATGCTGGTAAATGATGCAAAAAATGTACTCAAGCTTTGTGACTTTGGTAATGCTATGTTTGCTGGTAAAAATGAAATCACACCATACCTTGTGAGCCGTTTTTATCGCGCCCCCGAGATTATTTTGGGCTTGCCTTACGATCATCCCATGGATATTTGGTCTGTTGGTTGCTGTCTGTTTGAGCTGTATACTGGGAAAGTTCTTTTCCCTGGTCCATCGAACAATGACATGCTTCGCCTTCACATGGAATTAAAAGGTCCTTTTCCTAAGAAGATGCTTCGAAAGGGAGCATTTACGGAGCAGCACTTTGACCAGGATTTGAATTTTCTTGCGACAGAGGAGGATCCAGTTACAAAGAAGACCATCAAGAGGCTGATTCTTAATATCAAGCCAAAAGATATTGGTACAATAGTTTTGAGCTCTCCTGGCGAGGACCCAAAGATGTTAATAAACTTCAAAGATCTGCTGGAAAAAATATTCGTCTTGGATCCGGACAAGAGGATCACTGTATCACAAGCATTGAGCCATCCATTCATCACGGGCAAGTGA

Network for GWHGAAZE013377

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	43	357	1.80E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	CMGC_DYRK-PRP4

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.071
	SRR3591706	second leaf	9.613
	SRR3591707	mature leaf	11.550
	SRR3591708	Shoot apex	17.706
	SRR3591709	Stem	17.229
	SRR3591710	White floral bud	13.745
	SRR3591711	White flower	13.287
	SRR3591712	Green floral bud	11.853
	SRR3591713	Yellow flower	12.060
SRP173429	SRR8316895	Juvenile bud stage	14.795
	SRR8316896	Juvenile bud stage	21.196
	SRR8316897	Juvenile bud stage	10.310
	SRR8316894	Third green stage	7.841
	SRR8316900	Third green stage	17.975
	SRR8316901	Third green stage	16.172
	SRR8316898	Complete white stage	4.536
	SRR8316899	Complete white stage	21.502
	SRR8316903	Complete white stage	13.738
	SRR8316902	Silver flowering stage	7.302
	SRR8316904	Silver flowering stage	13.640
	SRR8316905	Silver flowering stage	5.506
	SRR8316906	Gold flowering stage	16.412
	SRR8316907	Gold flowering stage	15.516
	SRR8316908	Gold flowering stage	16.488
SRP132670	SRR6706286	Control	4.610
	SRR6706287	Light intensity 50%	5.199
	SRR6706288	Light intensity 20%	6.686
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.286
	CNS0095593	Slightly white alabastrum(diploid) 2	8.462
	CNS0095594	Slightly white alabastrum(diploid) 3	8.636
	CNS0095595	Whole white alabastrum(diploid) 2	8.621
	CNS0095596	Whole white alabastrum(diploid) 3	8.178
	CNS0095597	Whole white alabastrum(diploid) 4	7.758
	CNS0095598	Silvery flower (diploied) 1	9.621
	CNS0095599	Silvery flower (diploied) 2	10.223
	CNS0095600	Silvery flower (diploied) 3	16.762
	CNS0095601	Golden flower (diploid) 1	12.692
	CNS0095602	Golden flower (diploid) 2	19.226
	CNS0095603	Golden flower (diploid) 3	16.627
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.427
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.638
	CNS0095606	Slightly white alabastrum(tetraploid) 3	20.718
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.634
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.632
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.143
	CNS0095610	Silvery flower (tetraploid) 1	19.872
	CNS0095611	Silvery flower (tetraploid) 2	17.887
	CNS0095612	Silvery flower (tetraploid) 3	15.223
	CNS0095613	Golden flower (tetraploid) 1	9.503
	CNS0095614	Golden flower (tetraploid) 2	13.397
	CNS0095615	Golden flower (tetraploid) 3	17.425
CRA001975	CRR073297	Stem 1	10.951
	CRR073298	Stem 2	8.380
	CRR073299	Stem 3	6.964
	CRR073300	Leaf 1	7.856
	CRR073301	Leaf 2	6.612
	CRR073302	Leaf 3	4.300
	CRR073303	Juvenile bud 1	4.362
	CRR073304	Juvenile bud 2	3.444
	CRR073305	Juvenile bud 3	7.112
	CRR073306	Third green 1	2.364
	CRR073307	Third green 2	1.032
	CRR073308	Third green 3	3.595
	CRR073309	Second white 1	3.494
	CRR073310	Second white 2	4.605
	CRR073311	Second white 3	4.284
	CRR073312	Silver flowering 1	2.268
	CRR073313	Silver flowering 2	3.110
	CRR073314	Silver flowering 3	2.617
	CRR073315	Gold flowering 1	4.308
	CRR073316	Gold flowering 2	6.159
	CRR073317	Gold flowering 3	1.916
	CRR073318	Tawny withering 1	6.698
	CRR073319	Tawny withering 2	7.412
	CRR073320	Tawny withering 3	5.634