Gene detail

Detail information of GWHGAAZE013373

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHN05574.1	1.0477E-174	Putative DNA repair protein RAD23-3 [Glycine soja]
Swissprot	tr\|Q84L31\|RD23C_ARATH	6E-163	Ubiquitin receptor RAD23c
trEMBL	tr\|I1LEX5\|I1LEX5_SOYBN	1E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G42180.1}
TAIR10	AT3G02540.3	4E-122	Rad23 UV excision repair protein family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101690266	101693439	+
GWHAAZE00000003	mRNA	101690266	101693439	+
GWHAAZE00000003	exon	101690266	101690427	+
GWHAAZE00000003	exon	101690732	101690785	+
GWHAAZE00000003	exon	101691201	101691403	+
GWHAAZE00000003	exon	101691681	101691858	+
GWHAAZE00000003	exon	101692388	101692531	+
GWHAAZE00000003	exon	101692625	101692693	+
GWHAAZE00000003	exon	101692774	101692821	+
GWHAAZE00000003	exon	101692925	101693031	+
GWHAAZE00000003	exon	101693113	101693191	+
GWHAAZE00000003	exon	101693323	101693439	+
GWHAAZE00000003	CDS	101690266	101690427	+
GWHAAZE00000003	CDS	101690732	101690785	+
GWHAAZE00000003	CDS	101691201	101691403	+
GWHAAZE00000003	CDS	101691681	101691858	+
GWHAAZE00000003	CDS	101692388	101692531	+
GWHAAZE00000003	CDS	101692625	101692693	+
GWHAAZE00000003	CDS	101692774	101692821	+
GWHAAZE00000003	CDS	101692925	101693031	+
GWHAAZE00000003	CDS	101693113	101693191	+
GWHAAZE00000003	CDS	101693323	101693439	+

Transcript Sequence
>GWHTAAZE013387 GTGGCTGATGTGAAAAAAAGTATAGAAACTGTTCACGGGTCAGATGTTTATCCTGCTGCACAACAGATGCTTATCCATTCAGGGAAGGTGCTGAAAGATGAATCAACACTGGAAGAAAACAAAGTTATAGAAAATAGTTTTGTTGTCATCATGTTATCTAAGAACAAGAGCTCATCTGGTGAAGGTTCAACCACTTCAACTGCACCCACATCCAAGAGGATAATTACATCGAGAGGGCCTGTTTCTTATTTGACATGGCTCCTTGCAATCGTCATTCTCATTCTAAAATTTAAATATTTAGCATCTGGATTACTTAATGTGATGCATCTAAAAGAGCTATACCTCATGTTGGAACTGCAGACAAGTGCCGCACCTAGTTCAACGTCAGCATTTACTCCCCCTCAAGCTCCTATCGCACCGTCAGCACCTGATGTCTATGACCATGCAGCATCGAATTTGGTTGCTGGAAACAATCTTGAGGGAGCAATCCAGCAGATTCTTGATATGGGTGGAGGAACATGGGACAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTATAACAATCCTGAGAGAGCTGTTGAATATTTATATTCTGGCATCCCTGAGCAAGCTGAGGTTCCACCCGTGGCCAGACCTCTATCCAGCGGGCAGGCTGCAAACCCGACAGCTCAGCCTACCCAACCAGCACCTGTTCCCTTGGGTGGACCAAATGCAAATCCTTTGGATCTTTTTCCCCAGGGTCTTCCGGACATGGGTACTAATGCTGCTGGTGGAGGCAACCTGGACTTTCTACGCAACAGCCAACAGTTTCAAGCCTTTCGAGACATGGTGCATGCCAACCCACAAATTTTGCAGCCCATGCTTCAGGAGCTAGGGAAGCAAAATCCCAACTTGATGAGGCTTATTCAAGATCATCAGGCAGATTTCCTTCGCTTGATCAATGAACCTGTTGAAGGCGGAGACGACATATTAGGGCAGCTTGGCGATGCAATGCCGGCATCTGTAACAGTTACACCCGAGGAGAGTGAAGCAATAGAACGTCTTGAAGCAATGGGATTCGATAGGGCAACTGTGTTGGAGGTGTTCTTTGCCTGCAACAAGAACGAGGAGCTGGCTGCCAACTACCTTTTAGATCACATGCATGAGTTTGAAGATTGA

Network for GWHGAAZE013373

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00240.24	ubiquitin	1	54	2.10E-09
PF00627.32	UBA	162	197	1.50E-13
PF09280.12	XPC-binding	262	317	4.20E-21
PF00627.32	UBA	341	377	1.30E-12

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10839	RAD23, HR23	Protein processing in endoplasmic reticulum	map04141
K10839	RAD23, HR23	Nucleotide excision repair	map03420

Gene Ontology

GO term	Ontology	Name
GO:0006289	biological_process	nucleotide-excision repair
GO:0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0005634	cellular_component	nucleus
GO:0005515	molecular_function	protein binding
GO:0003684	molecular_function	damaged DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	84.911
	SRR3591706	second leaf	45.160
	SRR3591707	mature leaf	29.949
	SRR3591708	Shoot apex	74.953
	SRR3591709	Stem	77.168
	SRR3591710	White floral bud	74.421
	SRR3591711	White flower	99.927
	SRR3591712	Green floral bud	67.370
	SRR3591713	Yellow flower	80.138
SRP173429	SRR8316895	Juvenile bud stage	45.363
	SRR8316896	Juvenile bud stage	66.314
	SRR8316897	Juvenile bud stage	29.396
	SRR8316894	Third green stage	28.747
	SRR8316900	Third green stage	73.808
	SRR8316901	Third green stage	75.278
	SRR8316898	Complete white stage	38.250
	SRR8316899	Complete white stage	91.626
	SRR8316903	Complete white stage	58.388
	SRR8316902	Silver flowering stage	47.941
	SRR8316904	Silver flowering stage	52.736
	SRR8316905	Silver flowering stage	28.449
	SRR8316906	Gold flowering stage	123.484
	SRR8316907	Gold flowering stage	134.301
	SRR8316908	Gold flowering stage	117.016
SRP132670	SRR6706286	Control	81.906
	SRR6706287	Light intensity 50%	83.565
	SRR6706288	Light intensity 20%	84.448
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	67.066
	CNS0095593	Slightly white alabastrum(diploid) 2	81.952
	CNS0095594	Slightly white alabastrum(diploid) 3	62.035
	CNS0095595	Whole white alabastrum(diploid) 2	55.401
	CNS0095596	Whole white alabastrum(diploid) 3	47.866
	CNS0095597	Whole white alabastrum(diploid) 4	48.853
	CNS0095598	Silvery flower (diploied) 1	73.085
	CNS0095599	Silvery flower (diploied) 2	70.715
	CNS0095600	Silvery flower (diploied) 3	102.882
	CNS0095601	Golden flower (diploid) 1	63.882
	CNS0095602	Golden flower (diploid) 2	86.976
	CNS0095603	Golden flower (diploid) 3	83.519
	CNS0095604	Slightly white alabastrum(tetraploid) 1	65.748
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.038
	CNS0095606	Slightly white alabastrum(tetraploid) 3	85.645
	CNS0095607	Whole white alabastrum(tetraploid) 1	34.841
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.241
	CNS0095609	Whole white alabastrum(tetraploid) 3	48.021
	CNS0095610	Silvery flower (tetraploid) 1	93.186
	CNS0095611	Silvery flower (tetraploid) 2	92.489
	CNS0095612	Silvery flower (tetraploid) 3	74.439
	CNS0095613	Golden flower (tetraploid) 1	60.817
	CNS0095614	Golden flower (tetraploid) 2	75.878
	CNS0095615	Golden flower (tetraploid) 3	98.824
CRA001975	CRR073297	Stem 1	82.646
	CRR073298	Stem 2	74.073
	CRR073299	Stem 3	88.201
	CRR073300	Leaf 1	88.926
	CRR073301	Leaf 2	98.946
	CRR073302	Leaf 3	84.240
	CRR073303	Juvenile bud 1	89.753
	CRR073304	Juvenile bud 2	84.676
	CRR073305	Juvenile bud 3	143.722
	CRR073306	Third green 1	51.692
	CRR073307	Third green 2	52.544
	CRR073308	Third green 3	52.860
	CRR073309	Second white 1	81.868
	CRR073310	Second white 2	82.910
	CRR073311	Second white 3	61.090
	CRR073312	Silver flowering 1	55.222
	CRR073313	Silver flowering 2	68.572
	CRR073314	Silver flowering 3	48.308
	CRR073315	Gold flowering 1	47.253
	CRR073316	Gold flowering 2	59.359
	CRR073317	Gold flowering 3	44.722
	CRR073318	Tawny withering 1	87.979
	CRR073319	Tawny withering 2	76.669
	CRR073320	Tawny withering 3	79.826