Gene detail

Detail information of GWHGAAZE013361

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI27011.3	4.2717E-172	unnamed protein product [Vitis vinifera]
Swissprot	tr\|P25873\|RK15_ARATH	7E-112	50S ribosomal protein L15, chloroplastic (Precursor)
trEMBL	tr\|D7T940\|D7T940_VITVI	2E-172	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI27011.3}
TAIR10	AT1G77420.1	2E-125	alpha/beta-Hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101436901	101444952	+
GWHAAZE00000003	mRNA	101436901	101444952	+
GWHAAZE00000003	exon	101436901	101437167	+
GWHAAZE00000003	exon	101437317	101437346	+
GWHAAZE00000003	exon	101437824	101437953	+
GWHAAZE00000003	exon	101438115	101438261	+
GWHAAZE00000003	exon	101438652	101438782	+
GWHAAZE00000003	exon	101440389	101440487	+
GWHAAZE00000003	exon	101440635	101440802	+
GWHAAZE00000003	exon	101442543	101442906	+
GWHAAZE00000003	exon	101443867	101444018	+
GWHAAZE00000003	exon	101444722	101444952	+
GWHAAZE00000003	CDS	101436901	101437167	+
GWHAAZE00000003	CDS	101437317	101437346	+
GWHAAZE00000003	CDS	101437824	101437953	+
GWHAAZE00000003	CDS	101438115	101438261	+
GWHAAZE00000003	CDS	101438652	101438782	+
GWHAAZE00000003	CDS	101440389	101440487	+
GWHAAZE00000003	CDS	101440635	101440802	+
GWHAAZE00000003	CDS	101442543	101442906	+
GWHAAZE00000003	CDS	101443867	101444018	+
GWHAAZE00000003	CDS	101444722	101444952	+

Transcript Sequence
>GWHTAAZE013375 ATGGAACACTATTTTACCTCCCCGTTCCGACCACCGTCATCATCTCTCTTTCACCGGAACTTCATTCTCGTCCCTAAACTCAACCCAAGACCCACCATTTCCCGTACTCTTCCTTTAATCATGGCCAAGAAAAGCTCTACCATCGAAGGCGTTAGCCACGAGATGAACTTGATCGCTTCTCAGAACCTCGACTTCGCTCCGGCGAGACGGCGTGTTCGGTCTGCGTTCGTCGACGCTCAGCAGCAGCTCGATCATTGCTTGTTTAAGATGGCTCCTACTGGGATCAGAACAGAGGAATGGTATGAGAGGAATTCAAAGGGTCAAGAAATTTTCTGTAAGAGTTGGTTGCCAAAGCCTGGTGTTCGAATTAAAGGTGCTTTGTGTTTCTGTCATGGATATGGCGATACTTGCACTTTTTTCTTTGAAGGTATTGCCAAGCAAATTGCTGCTTCTGGGTATGGTGTTTATGCTCTTGATCACCCAGGTTTTGGTCTCTCTGAGGGATTGCACGGTTACGTCTCCAGTTTTGATGATATTGTTGACAATGTAATTGAACAATATACCAAAATCAAAGGAAGACCTGAAATAAGAGGACTGCCCTGTTTTATATTGGGTCAGTCCATGGGTGGAGCGGTTGCTCTCAAAGTTCACCTGAAGGAACCACAGGAGTGGGATGGAATAGTTCTTGTATCTCCGATGTGTAAAGCTGCCTACAATGTTATCTGTTATAATGATCAAACGCGATTAAAGACTGCTGTGGAGCTTCTAGAGGCTACCCTTGATATTGAATCAAAGGTGGAGGAGGTTTCTTCACCATTGCTTATCCTTCATGGAGCTGCTGATAAGGTGACAGACCCAATGGTGAGCCAGTTTCTTTACGAGAAGGCTTCAAGCAAGGACAAAACCCTAAAGCTCTACAAAGGAGGTTATCACTGCATTCTCGAAGGGGAACCCGATGAGAGGATTTTTACTGGGAATGTGAGTAATTTGAAGGCAAACAGATGTTACTTTTCTTCTCTGAAAGTACACCACAACAACCCAATCACTGTAACAAGACCTCTAATTATAGTCTGCCAAGCTTCATCGTCACCAATTGCAGCGGCTGAATCATCACTAACCAATGTTAGATTTCGACTGGACAATCTGGGACCTCAAAAGGGTTCAAGAAAGAAGGCCAAGAGAAAGGGTAGGGGTCACGCTGCTGGCCAAGGGGGCAGTTGCGGGTTTGGGATGAGAGGTCAGAAATCGAGGTCCGGTCCCGGTGTTCGTAAGGGTTTCGAAGGGGGGCAGATGCCCCTCTACCGTCGACTCCCTAAATTGAGGGGTATTGCTGGAGGTATGCGTGCTGGATTACCAAAATTTGTGCCAGTGAACTTAAAAGATATAGCAACTGCTGGATTCCAGGAGGGAGACGAGGTCTCTCTGGAATCACTAAAGCAGAAGGGCTTGATCAACCCATCGGGAAGAGAAAGGAGACTTCCTATAAAGATTCTAGGTAATGGGGAAGTTAGTGTGAAACTGAGCTTCAAGGCTCGAGCATTTTCAAAAGGAGCAAAAGAAAAGCTAGAGGCGGCTGGGTGTTCATTGACGACATTACCAGGCAGGAAGAAATGGGTAAAGCCATCAGTTGCTAAGAACCTAGCTCGCGCTGATGAATACTTTGCCAAGAAAAGAGCTGCTGCGGCAGCTGCTGAGGAAGCTGGAACCCCATCTGCCTGA

Network for GWHGAAZE013361

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12146.9	Hydrolase_4	124	237	1.80E-32
PF12146.9	Hydrolase_4	241	318	9.20E-18
PF00828.20	Ribosomal_L27A	403	530	2.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01054	MGLL	Metabolic pathways	map01100
		Glycerolipid metabolism	map00561
		Regulation of lipolysis in adipocytes	map04923
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0015934	cellular_component	large ribosomal subunit
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	91.889
	SRR3591706	second leaf	161.418
	SRR3591707	mature leaf	90.577
	SRR3591708	Shoot apex	137.454
	SRR3591709	Stem	67.063
	SRR3591710	White floral bud	68.524
	SRR3591711	White flower	58.463
	SRR3591712	Green floral bud	75.196
	SRR3591713	Yellow flower	40.014
SRP173429	SRR8316895	Juvenile bud stage	77.533
	SRR8316896	Juvenile bud stage	81.272
	SRR8316897	Juvenile bud stage	45.090
	SRR8316894	Third green stage	34.688
	SRR8316900	Third green stage	120.865
	SRR8316901	Third green stage	109.291
	SRR8316898	Complete white stage	45.692
	SRR8316899	Complete white stage	113.218
	SRR8316903	Complete white stage	66.467
	SRR8316902	Silver flowering stage	37.386
	SRR8316904	Silver flowering stage	41.332
	SRR8316905	Silver flowering stage	25.966
	SRR8316906	Gold flowering stage	70.154
	SRR8316907	Gold flowering stage	69.002
	SRR8316908	Gold flowering stage	62.273
SRP132670	SRR6706286	Control	102.950
	SRR6706287	Light intensity 50%	106.298
	SRR6706288	Light intensity 20%	114.684
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	57.189
	CNS0095593	Slightly white alabastrum(diploid) 2	51.315
	CNS0095594	Slightly white alabastrum(diploid) 3	42.443
	CNS0095595	Whole white alabastrum(diploid) 2	50.633
	CNS0095596	Whole white alabastrum(diploid) 3	57.932
	CNS0095597	Whole white alabastrum(diploid) 4	43.532
	CNS0095598	Silvery flower (diploied) 1	60.436
	CNS0095599	Silvery flower (diploied) 2	58.695
	CNS0095600	Silvery flower (diploied) 3	53.603
	CNS0095601	Golden flower (diploid) 1	47.338
	CNS0095602	Golden flower (diploid) 2	49.980
	CNS0095603	Golden flower (diploid) 3	47.141
	CNS0095604	Slightly white alabastrum(tetraploid) 1	56.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.039
	CNS0095606	Slightly white alabastrum(tetraploid) 3	92.280
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.311
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.553
	CNS0095609	Whole white alabastrum(tetraploid) 3	83.785
	CNS0095610	Silvery flower (tetraploid) 1	50.192
	CNS0095611	Silvery flower (tetraploid) 2	53.223
	CNS0095612	Silvery flower (tetraploid) 3	43.664
	CNS0095613	Golden flower (tetraploid) 1	27.815
	CNS0095614	Golden flower (tetraploid) 2	41.438
	CNS0095615	Golden flower (tetraploid) 3	17.732
CRA001975	CRR073297	Stem 1	87.866
	CRR073298	Stem 2	82.249
	CRR073299	Stem 3	101.501
	CRR073300	Leaf 1	80.434
	CRR073301	Leaf 2	72.847
	CRR073302	Leaf 3	95.950
	CRR073303	Juvenile bud 1	88.298
	CRR073304	Juvenile bud 2	97.971
	CRR073305	Juvenile bud 3	94.489
	CRR073306	Third green 1	62.203
	CRR073307	Third green 2	43.012
	CRR073308	Third green 3	53.681
	CRR073309	Second white 1	40.731
	CRR073310	Second white 2	30.750
	CRR073311	Second white 3	24.025
	CRR073312	Silver flowering 1	21.123
	CRR073313	Silver flowering 2	23.958
	CRR073314	Silver flowering 3	22.652
	CRR073315	Gold flowering 1	130.009
	CRR073316	Gold flowering 2	136.587
	CRR073317	Gold flowering 3	121.995
	CRR073318	Tawny withering 1	53.128
	CRR073319	Tawny withering 2	57.133
	CRR073320	Tawny withering 3	57.111