Gene detail

Detail information of GWHGAAZE013349

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002279580.1	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Vitis vinifera]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|F6HFM6\|F6HFM6_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB50892.1}
TAIR10	AT1G68400.1	leucine-rich repeat transmembrane protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	101236179	101240286	+
GWHAAZE00000003	mRNA	101236179	101240286	+
GWHAAZE00000003	exon	101236179	101236622	+
GWHAAZE00000003	exon	101236714	101237497	+
GWHAAZE00000003	exon	101239562	101240286	+
GWHAAZE00000003	CDS	101236179	101236622	+
GWHAAZE00000003	CDS	101236714	101237497	+
GWHAAZE00000003	CDS	101239562	101240187	+
GWHAAZE00000003	three_prime_UTR	101240188	101240286	+

Transcript Sequence
>GWHTAAZE013363 TTTGCTTTCTCTCTATTCCTCCTCTATTTCTCTCTCCTCAAATCTTCTCCCCACCCAGACCTCCGAGCTCTATCCTCATTCAAATCACTTTCAGATACATCAAACAAACTCACCGATTGGAACACAAGCACCAGCCCCAGCCCCTGCAACTGGTATGGTATCTCTTGCCTTGATAACCGAGTCTCCAGACTCGTGCTCGAGAAACTTGATCTCACTGGCACTATTCATCCCTTAACATCTTTGACTCAGCTCCGAGTTCTCAGTCTCAAAAATAACAGCCTTGCCGGTCCCATCCCCGATCTCTCTAACCTCACCGCTTTAAAACTCCTATTTCTGTCCTACAATCACTTCTCCGGCGATTTTCCGGCTTCTTTACCCTCACTTTTCCGGCTTTACCGTCTCGATCTATCGCACAACAACTTTTCCGGTCAGATTCCGGCGACTGACTTCAACGTCTCAGGCAATAGATTCACCGGAAAAGTACCGGACGCTCTCTCCGGCTTCCCTGCATCCGCATTCACCGGCAATGCGGTTCTTTGCGGCTCGCCGCTCCCCAACTGTACGAATGTTGACCCGTCCCAGCCCGGTTCATCCGGAGCAATACCGGCTTCCGGGACTAAACCGACAGTGGCTTCTTCGCCGAGCGCAATGCCCGCGTACACTGTGCCGATTAAATCAGGGGGTAAGCACCATAGCGGTTCGGGAAAAATCAGTCCAGTAGCCATAGGGTTGATTATTATTGGGGACTTGTTGGTCCTGGGATTAGTATCTCTCCTCCTATACTGCTACTTCTGGAGAAATTACTCGGGAAAGATGCGAGACAGTAAGTCATCGTCGTCGCAGATTCTGGAAGGGGAAAAGATTGTTTACTCATCGAGCCCCTACCCGATGGCCCAGCCGGGGTATGACAGGGGCAAAATGGTATTTTTCGAGGGCGCAAAGAGGTTTGAGTTGGAGGATTTGCTTCGAGCTTCGGCGGAGATGCTGGGTAAAGGTGGATTTGGGACGGCGTACAAGGCGGTGCTTGACGACGGAAATGTGGTTGCGGTGAAGAGGTTGAAGGAGACTAATGTGGGAGGGAAGCGTGAGTTTGAGCAGCACATGGAGGTTTTGGGGAGGTTAAGGCACTCGAATATTGTGAGCTTGAAAGCGTATTACTTTGCCAGGGATGAGAAATTGCTGGTTTATGATTACATGCCTAATGGAAATTTGTTTTGGCTTCTTCACGGAAACCGAGGTCCGGGGCGAACCCCACTAGACTGGACCACAAGGCTCAAGATCGCAGCCGGCGCGGCTCGTGGGCTGGCCTTTATTCACAACTCTTGTAGATCCCTTAAACTCACACACGGCAACATCAAATCCACAAACATCCTACTAGACAAGGCCGGTAATGCACGTGTCTCGGACTTTGGCCTCTCTGCCTTTGTTCCGCCCTCGACAGCCCCCAGATCCAACGGCTACCGGGCCCCAGAAGCAATGGACGGTCGAAAATTAACCCAGAAATCAGACGTGTACTCTTTCGGGGTTCTGTTGCTTGAATTGTTGACCGGAAAGTGTCCGTCAGTGGTGGAGAACGGTGGGCCGGGGACTGGATACGGAGGGGTGGTGGATTTGCCAAGATGGGTACAATCAGTGGTGAGGGAGGAGTGGACGGCGGAGGTGTTTGATTTGGAGCTGATGAGGTATAAGGACATAGAGGAGGAGATGGTGGGGCTTTTGCAGATTGCTATGGCTTGTACGGCGGTGTCGCCGGAACAAAGGCCCAACGTGGGATACGTGGTGAAAATGATAGAGGAGATGCGGGGAGTCGAGGTGTCGCCCTCACACGAGACACTTGTTGACTCCGGTATCTGACTCGCCTTCTGTATCAGAAGACACGTGCGGAGCGAGTCAGTAATTTAAGGGGAAAAAAAACCAAAGAGACTCCTTGTTTGACTGCTGCTGTAAAATAGG

Network for GWHGAAZE013349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF08263.13	LRRNT_2	19	56	1.80E-07
PF00069.26	Pkinase	327	526	9.90E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.747
	SRR3591706	second leaf	3.834
	SRR3591707	mature leaf	0.795
	SRR3591708	Shoot apex	19.904
	SRR3591709	Stem	8.788
	SRR3591710	White floral bud	1.403
	SRR3591711	White flower	0.758
	SRR3591712	Green floral bud	3.004
	SRR3591713	Yellow flower	0.080
SRP173429	SRR8316895	Juvenile bud stage	3.478
	SRR8316896	Juvenile bud stage	3.265
	SRR8316897	Juvenile bud stage	2.603
	SRR8316894	Third green stage	1.663
	SRR8316900	Third green stage	1.416
	SRR8316901	Third green stage	2.097
	SRR8316898	Complete white stage	0.082
	SRR8316899	Complete white stage	1.588
	SRR8316903	Complete white stage	0.284
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.034
	SRR8316906	Gold flowering stage	0.105
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.148
SRP132670	SRR6706286	Control	3.124
	SRR6706287	Light intensity 50%	2.858
	SRR6706288	Light intensity 20%	2.881
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.498
	CNS0095593	Slightly white alabastrum(diploid) 2	2.534
	CNS0095594	Slightly white alabastrum(diploid) 3	3.977
	CNS0095595	Whole white alabastrum(diploid) 2	2.165
	CNS0095596	Whole white alabastrum(diploid) 3	1.267
	CNS0095597	Whole white alabastrum(diploid) 4	1.969
	CNS0095598	Silvery flower (diploied) 1	1.526
	CNS0095599	Silvery flower (diploied) 2	1.513
	CNS0095600	Silvery flower (diploied) 3	0.148
	CNS0095601	Golden flower (diploid) 1	1.274
	CNS0095602	Golden flower (diploid) 2	0.547
	CNS0095603	Golden flower (diploid) 3	0.824
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.951
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.150
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.226
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.752
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.624
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.724
	CNS0095610	Silvery flower (tetraploid) 1	0.028
	CNS0095611	Silvery flower (tetraploid) 2	0.496
	CNS0095612	Silvery flower (tetraploid) 3	0.109
	CNS0095613	Golden flower (tetraploid) 1	0.019
	CNS0095614	Golden flower (tetraploid) 2	0.159
	CNS0095615	Golden flower (tetraploid) 3	0.028
CRA001975	CRR073297	Stem 1	5.059
	CRR073298	Stem 2	4.899
	CRR073299	Stem 3	6.127
	CRR073300	Leaf 1	2.543
	CRR073301	Leaf 2	2.165
	CRR073302	Leaf 3	2.342
	CRR073303	Juvenile bud 1	0.968
	CRR073304	Juvenile bud 2	0.375
	CRR073305	Juvenile bud 3	1.165
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.028
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.110
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.056
	CRR073316	Gold flowering 2	0.326
	CRR073317	Gold flowering 3	0.796
	CRR073318	Tawny withering 1	7.603
	CRR073319	Tawny withering 2	4.606
	CRR073320	Tawny withering 3	12.152