Detail information of GWHGAAZE013334


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrO82039.1SPY_PETHY0RecName: Full=Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY; AltName: Full=PhSPY [Petunia x hybrida]
Swissprottr|O82039|SPY_PETHY0Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY
trEMBLtr|A0A068UQ25|A0A068UQ25_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_45 {ECO:0000313|EMBL:CDP10640.1}
TAIR10AT3G11540.11E-138Tetratricopeptide repeat (TPR)-like superfamily protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene100961047100966406-
GWHAAZE00000003mRNA100961047100966406-
GWHAAZE00000003exon100966243100966406-
GWHAAZE00000003exon100964959100965395-
GWHAAZE00000003exon100963049100963135-
GWHAAZE00000003exon100962527100962688-
GWHAAZE00000003exon100962105100962280-
GWHAAZE00000003exon100961673100961748-
GWHAAZE00000003exon100961141100961276-
GWHAAZE00000003exon100961047100961054-
GWHAAZE00000003five_prime_UTR100966243100966406-
GWHAAZE00000003five_prime_UTR100965370100965395-
GWHAAZE00000003CDS100964959100965369-
GWHAAZE00000003CDS100963049100963135-
GWHAAZE00000003CDS100962527100962688-
GWHAAZE00000003CDS100962105100962280-
GWHAAZE00000003CDS100961673100961748-
GWHAAZE00000003CDS100961141100961276-
GWHAAZE00000003CDS100961047100961054-
Transcript Sequence

Network for GWHGAAZE013334

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00515.29TPR_12202463.20E-08
PF00515.29TPR_12542871.80E-10
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K09667OGT Other types of O-glycan biosynthesis map00514

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.829
SRR3591706second leaf12.939
SRR3591707mature leaf13.951
SRR3591708Shoot apex13.879
SRR3591709Stem16.777
SRR3591710White floral bud15.724
SRR3591711White flower21.630
SRR3591712Green floral bud15.931
SRR3591713Yellow flower18.578
SRP173429 SRR8316895Juvenile bud stage 11.428
SRR8316896Juvenile bud stage 14.873
SRR8316897Juvenile bud stage 7.291
SRR8316894Third green stage 7.092
SRR8316900Third green stage 17.250
SRR8316901Third green stage 15.049
SRR8316898Complete white stage 6.433
SRR8316899Complete white stage 23.634
SRR8316903Complete white stage 15.655
SRR8316902Silver flowering stage6.373
SRR8316904Silver flowering stage11.350
SRR8316905Silver flowering stage4.263
SRR8316906Gold flowering stage 18.304
SRR8316907Gold flowering stage 16.119
SRR8316908Gold flowering stage 19.403
SRP132670SRR6706286Control24.220
SRR6706287Light intensity 50%24.921
SRR6706288Light intensity 20%27.718
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.921
CNS0095593Slightly white alabastrum(diploid) 22.823
CNS0095594Slightly white alabastrum(diploid) 33.951
CNS0095595Whole white alabastrum(diploid) 26.989
CNS0095596Whole white alabastrum(diploid) 33.225
CNS0095597Whole white alabastrum(diploid) 44.369
CNS0095598Silvery flower (diploied) 115.221
CNS0095599Silvery flower (diploied) 211.126
CNS0095600Silvery flower (diploied) 324.377
CNS0095601Golden flower (diploid) 18.401
CNS0095602Golden flower (diploid) 225.617
CNS0095603Golden flower (diploid) 325.470
CNS0095604Slightly white alabastrum(tetraploid) 17.495
CNS0095605Slightly white alabastrum(tetraploid) 25.188
CNS0095606Slightly white alabastrum(tetraploid) 322.125
CNS0095607Whole white alabastrum(tetraploid) 15.825
CNS0095608Whole white alabastrum(tetraploid) 25.528
CNS0095609Whole white alabastrum(tetraploid) 318.605
CNS0095610Silvery flower (tetraploid) 124.469
CNS0095611Silvery flower (tetraploid) 225.686
CNS0095612Silvery flower (tetraploid) 314.288
CNS0095613Golden flower (tetraploid) 15.625
CNS0095614Golden flower (tetraploid) 219.213
CNS0095615Golden flower (tetraploid) 319.763
CRA001975CRR073297Stem 117.313
CRR073298Stem 218.217
CRR073299Stem 315.811
CRR073300Leaf 119.642
CRR073301Leaf 214.150
CRR073302Leaf 314.766
CRR073303Juvenile bud 113.099
CRR073304Juvenile bud 212.629
CRR073305Juvenile bud 318.809
CRR073306Third green 14.445
CRR073307Third green 25.686
CRR073308Third green 36.174
CRR073309Second white 16.753
CRR073310Second white 24.784
CRR073311Second white 36.291
CRR073312Silver flowering 16.192
CRR073313Silver flowering 25.990
CRR073314Silver flowering 35.362
CRR073315Gold flowering 16.444
CRR073316Gold flowering 210.678
CRR073317Gold flowering 36.953
CRR073318Tawny withering 18.414
CRR073319Tawny withering 28.122
CRR073320Tawny withering 39.942