Detail information of GWHGAAZE013328


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009340966.10PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Pyrus x bretschneideri]
Swissprottr|Q9ZSS6|THD1_ARATH0Threonine dehydratase biosynthetic, chloroplastic (Precursor)
trEMBLtr|A0A067K2J0|A0A067K2J0_JATCU0Uncharacterized protein {ECO:0000313|EMBL:KDP29223.1}
TAIR10AT3G10050.10L-O-methylthreonine resistant 1

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene100829801100841457-
GWHAAZE00000003mRNA100829801100841457-
GWHAAZE00000003exon100829801100829941-
GWHAAZE00000003exon100830793100830927-
GWHAAZE00000003exon100832736100832853-
GWHAAZE00000003exon100833695100833765-
GWHAAZE00000003exon100834705100834953-
GWHAAZE00000003exon100836297100836503-
GWHAAZE00000003exon100836877100837155-
GWHAAZE00000003exon100837624100837803-
GWHAAZE00000003exon100840979100841457-
GWHAAZE00000003five_prime_UTR100841372100841457-
GWHAAZE00000003CDS100840979100841371-
GWHAAZE00000003CDS100837624100837803-
GWHAAZE00000003CDS100836877100837155-
GWHAAZE00000003CDS100836297100836503-
GWHAAZE00000003CDS100834705100834953-
GWHAAZE00000003CDS100833695100833765-
GWHAAZE00000003CDS100832736100832853-
GWHAAZE00000003CDS100830793100830927-
GWHAAZE00000003CDS100829801100829941-
Transcript Sequence

Network for GWHGAAZE013328

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00291.26PALP1033943.40E-81
PF00585.19Thr_dehydrat_C4074962.30E-22
PF00585.19Thr_dehydrat_C5035872.30E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01754E4.3.1.19, ilvA, tdcB Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Carbon metabolismmap01200
Biosynthesis of amino acidsmap01230
Glycine, serine and threonine metabolismmap00260
Valine, leucine and isoleucine biosynthesismap00290

Gene Ontology

GO term OntologyName
GO:0006520biological_processcellular amino acid metabolic process
GO:0009097biological_processisoleucine biosynthetic process
GO:0030170molecular_functionpyridoxal phosphate binding
GO:0004794molecular_functionL-threonine ammonia-lyase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf71.412
SRR3591706second leaf39.600
SRR3591707mature leaf35.383
SRR3591708Shoot apex76.144
SRR3591709Stem45.169
SRR3591710White floral bud273.558
SRR3591711White flower220.893
SRR3591712Green floral bud330.396
SRR3591713Yellow flower278.208
SRP173429 SRR8316895Juvenile bud stage 104.730
SRR8316896Juvenile bud stage 231.687
SRR8316897Juvenile bud stage 93.505
SRR8316894Third green stage 139.017
SRR8316900Third green stage 535.606
SRR8316901Third green stage 568.333
SRR8316898Complete white stage 349.752
SRR8316899Complete white stage 481.893
SRR8316903Complete white stage 606.092
SRR8316902Silver flowering stage128.510
SRR8316904Silver flowering stage179.529
SRR8316905Silver flowering stage114.974
SRR8316906Gold flowering stage 214.340
SRR8316907Gold flowering stage 178.840
SRR8316908Gold flowering stage 128.129
SRP132670SRR6706286Control1049.115
SRR6706287Light intensity 50%1072.333
SRR6706288Light intensity 20%1098.527
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1123.108
CNS0095593Slightly white alabastrum(diploid) 2125.519
CNS0095594Slightly white alabastrum(diploid) 3131.993
CNS0095595Whole white alabastrum(diploid) 2187.321
CNS0095596Whole white alabastrum(diploid) 3240.799
CNS0095597Whole white alabastrum(diploid) 4224.632
CNS0095598Silvery flower (diploied) 1115.931
CNS0095599Silvery flower (diploied) 2152.666
CNS0095600Silvery flower (diploied) 3762.196
CNS0095601Golden flower (diploid) 1156.451
CNS0095602Golden flower (diploid) 2394.277
CNS0095603Golden flower (diploid) 3390.743
CNS0095604Slightly white alabastrum(tetraploid) 1143.961
CNS0095605Slightly white alabastrum(tetraploid) 2120.806
CNS0095606Slightly white alabastrum(tetraploid) 3197.590
CNS0095607Whole white alabastrum(tetraploid) 195.066
CNS0095608Whole white alabastrum(tetraploid) 2114.020
CNS0095609Whole white alabastrum(tetraploid) 3560.008
CNS0095610Silvery flower (tetraploid) 1442.627
CNS0095611Silvery flower (tetraploid) 2558.356
CNS0095612Silvery flower (tetraploid) 3626.767
CNS0095613Golden flower (tetraploid) 1213.936
CNS0095614Golden flower (tetraploid) 2443.958
CNS0095615Golden flower (tetraploid) 3383.890
CRA001975CRR073297Stem 1222.352
CRR073298Stem 2247.840
CRR073299Stem 3197.141
CRR073300Leaf 1501.367
CRR073301Leaf 2346.686
CRR073302Leaf 3391.611
CRR073303Juvenile bud 1383.584
CRR073304Juvenile bud 2974.494
CRR073305Juvenile bud 3390.247
CRR073306Third green 1357.665
CRR073307Third green 2216.742
CRR073308Third green 3265.520
CRR073309Second white 1170.815
CRR073310Second white 2168.711
CRR073311Second white 3102.933
CRR073312Silver flowering 150.219
CRR073313Silver flowering 263.367
CRR073314Silver flowering 359.941
CRR073315Gold flowering 110.195
CRR073316Gold flowering 215.278
CRR073317Gold flowering 310.253
CRR073318Tawny withering 122.226
CRR073319Tawny withering 218.329
CRR073320Tawny withering 323.815