Gene detail

Detail information of GWHGAAZE013318

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283857.1	0	PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Vitis vinifera]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	5E-106	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|F6HKF8\|F6HKF8_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55380.1}
TAIR10	AT2G36570.1	2E-139	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100629109	100631204	+
GWHAAZE00000003	mRNA	100629109	100631204	+
GWHAAZE00000003	exon	100629109	100629229	+
GWHAAZE00000003	exon	100629316	100629573	+
GWHAAZE00000003	exon	100630543	100631204	+
GWHAAZE00000003	CDS	100629109	100629229	+
GWHAAZE00000003	CDS	100629316	100629573	+
GWHAAZE00000003	CDS	100630543	100631204	+

Transcript Sequence
>GWHTAAZE013332 ATGGCATATTGTTGCAGCAAATTCAATGGAGAAACGGAGTCGAACTTCAATTCTTCGAAGAGGAGTGTTTCGAGTGAGAGAAAGGTGTACGCGAACAATGGCGGTGGTTATGATAGTGATGGCATCGGCGGAGATGTTGGGGAAAGGAGTTTGGGAACGGTGTATAAGGCGGTGCTGGATGGTGGTTGTACGGTGGCGGTGAAGAGGTTGAAGGATGCAAATCCGTGTGGGAGGAAGGAGTTTGAGCAGTATATGGATGTGATTGGGAAGTTGAGGCATCCAAATATTGTGAGGTTTAGAGCTTTTTATTATGCTAAGGAAGAGAAGCTTCTTGTTTATGATTATCTGCCCAATGGAAGCTTGCACTCACTTCTTCATGGCAATCGAGGACCGGGGAGAATTCCACTGGATTGGACAACAAGGATCAGCTTGGTACTAGGTGCAGCTCGAGGTCTAGCTCGTATTCATGAAGAGTATGGGGTTACAAAAATCCCTCATGGGAATGTGAAATCATCGAACGTACTACTCGACAAAAATGGTGTTGCTTGTATTGCCGATTTTGGGTTAGCCTTGCTCTTGAACCCAGCTCATGCCACAGCAAGATTGGGAGGATACATGGCACCAGAACAGGCGGAAACTAAGCGACTCTCTCAAAAAGCTGATGTTTACAGCTTTGGAGTTTTGTTACTAGAAGTGCTCACAGGCCGAGCACCATCACAACATCCCTCATCGAGCCATAGACTCGAGGAAGATGAACGAGCCGTTGATTTGCCTAAATGGGTTCGATCGGTGGTGAGGGACGAGTGGACTGCCGAAGTCTTTGATCAAGAGCTCTTGAGGTACAAGAACATTGAGGAAGAGCTTGTTGCAATGCTCCACGTGGCAATGGCTTGTGTGGTGGCGCTTCCAGAGAAACGGCCTACGATGACTGAGGTGGCTAAATTGATAGAGGAGATTAGGGTCGAGCAGTCTCCATTAGGGGAAGATTATGATGAATCGCGCAATTCGCTCTCACCTTCCCTCGCAACCACCGAGGATTGA

Network for GWHGAAZE013318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	45	313	1.90E-35

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.960
	SRR3591706	second leaf	10.364
	SRR3591707	mature leaf	2.831
	SRR3591708	Shoot apex	27.757
	SRR3591709	Stem	30.568
	SRR3591710	White floral bud	2.951
	SRR3591711	White flower	2.295
	SRR3591712	Green floral bud	5.247
	SRR3591713	Yellow flower	0.351
SRP173429	SRR8316895	Juvenile bud stage	5.329
	SRR8316896	Juvenile bud stage	7.195
	SRR8316897	Juvenile bud stage	2.902
	SRR8316894	Third green stage	2.380
	SRR8316900	Third green stage	4.152
	SRR8316901	Third green stage	3.367
	SRR8316898	Complete white stage	0.986
	SRR8316899	Complete white stage	6.156
	SRR8316903	Complete white stage	1.137
	SRR8316902	Silver flowering stage	0.149
	SRR8316904	Silver flowering stage	0.514
	SRR8316905	Silver flowering stage	0.180
	SRR8316906	Gold flowering stage	0.453
	SRR8316907	Gold flowering stage	0.968
	SRR8316908	Gold flowering stage	0.696
SRP132670	SRR6706286	Control	3.488
	SRR6706287	Light intensity 50%	3.434
	SRR6706288	Light intensity 20%	4.560
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.117
	CNS0095593	Slightly white alabastrum(diploid) 2	8.095
	CNS0095594	Slightly white alabastrum(diploid) 3	7.082
	CNS0095595	Whole white alabastrum(diploid) 2	2.853
	CNS0095596	Whole white alabastrum(diploid) 3	3.955
	CNS0095597	Whole white alabastrum(diploid) 4	2.012
	CNS0095598	Silvery flower (diploied) 1	5.460
	CNS0095599	Silvery flower (diploied) 2	4.334
	CNS0095600	Silvery flower (diploied) 3	1.764
	CNS0095601	Golden flower (diploid) 1	4.031
	CNS0095602	Golden flower (diploid) 2	3.326
	CNS0095603	Golden flower (diploid) 3	3.032
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.086
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.971
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.876
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.558
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.710
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.338
	CNS0095610	Silvery flower (tetraploid) 1	1.976
	CNS0095611	Silvery flower (tetraploid) 2	3.041
	CNS0095612	Silvery flower (tetraploid) 3	2.672
	CNS0095613	Golden flower (tetraploid) 1	0.762
	CNS0095614	Golden flower (tetraploid) 2	2.396
	CNS0095615	Golden flower (tetraploid) 3	0.498
CRA001975	CRR073297	Stem 1	10.875
	CRR073298	Stem 2	9.691
	CRR073299	Stem 3	21.414
	CRR073300	Leaf 1	6.182
	CRR073301	Leaf 2	6.909
	CRR073302	Leaf 3	4.091
	CRR073303	Juvenile bud 1	4.816
	CRR073304	Juvenile bud 2	1.427
	CRR073305	Juvenile bud 3	7.333
	CRR073306	Third green 1	1.988
	CRR073307	Third green 2	1.843
	CRR073308	Third green 3	1.589
	CRR073309	Second white 1	1.772
	CRR073310	Second white 2	1.940
	CRR073311	Second white 3	1.193
	CRR073312	Silver flowering 1	1.252
	CRR073313	Silver flowering 2	0.522
	CRR073314	Silver flowering 3	0.694
	CRR073315	Gold flowering 1	7.455
	CRR073316	Gold flowering 2	6.925
	CRR073317	Gold flowering 3	8.450
	CRR073318	Tawny withering 1	80.822
	CRR073319	Tawny withering 2	39.903
	CRR073320	Tawny withering 3	87.106