Gene detail

Detail information of GWHGAAZE013312

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15342.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9M9C5\|Y1680_ARATH	4E-167	Probable leucine-rich repeat receptor-like protein kinase At1g68400 (Precursor)
trEMBL	tr\|A0A068V453\|A0A068V453_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313\|EMBL:CDP15342.1}
TAIR10	AT2G36570.1	0	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100510873	100514014	+
GWHAAZE00000003	mRNA	100510873	100514014	+
GWHAAZE00000003	exon	100510873	100512373	+
GWHAAZE00000003	exon	100513353	100514014	+
GWHAAZE00000003	CDS	100510873	100512373	+
GWHAAZE00000003	CDS	100513353	100514014	+

Transcript Sequence
>GWHTAAZE013326 TTGTTAGTGAACAGGAAAAATCAGCGGATAGGAAGAAGGGACCCACAAACTTTTAACTTCTACACTTCAAATTCTCAAATCCTTAAAGACTTTTTAAAAACACACACTCATCTCTCCACTTCCCGCGCAAGCTCTCCAAACGGCCAATTCCCATGGAGATTTCTCCCTTCCACCTCCTCCTCCTCCTCCTCTCTCTTTCTCTCTACAAACTCTCTCTCTCCTCCCACCAATGACACCGCGTCCCTCTCCCTCTTCCGCTCCCAAACCGACACCCACGGCACCCTCCTCTCCAACTGGACCCTTCCCTCCCCATCCTCCACGGCCTGCTCCGCCGCTTGGCTCGGAGTCCAATGCACCAACGACCGAGTCACCGCCCTCATCCTCCCCTCCCTCAACCTCCGTGGCCCCATTGACTCTCTCTCCTCCCTCGACCAGCTCCGCCTCCTTGACCTCCACAATAACCGCCTCAACGGCACAATCACCTCCCTCACCGTATGCATTAATCTAAAACTCATCTACCTCTCTAGCAACGACTTCTCGGGGGAGATTCCCCGGGAAATCTCGTCCCTCCGCCGCCTCCTCCGCTTAGACCTCTCAGATAACAACATTCAAGGCACTATACCTATCCAGATCTCGAATCTCACTCGACTAATAACCCTCCGCCTCGATAACAACCAGATCTCGGGCCAAATCCCCAACACAATTAACTCAATTCCCCAATTGAAACAACTCAACCTATCAAACAACGAGTTCTACGGATCCATACCGGAAAACTTAATTTCAAAATTCGGTTACCGGAGCTTCACCGGTAACGAAGGCCTATGCGGATCGGATCCATTACATGCCTGTTCGTTCACCGGAACCCCTCCCGCCTCCCCCCAAACCGTACCGTCAAACCCTAGCTCATTACCTACAACAACACAACCAAAGTTGATGGAGACAAAAACACAAGCACATAAAGGAATCTCACCTGGAGCCATAGTAGCAATAGTTGTAGCAACTTCAGTGCTTCTATTAGTACTCGTATCGTTCCTAATGGCATATTGTTGCAGCAAATTCAATGGAGAAACGGAGTCGAACTTCAATTCTTCGAAGAGGAGTGTTTCGAGTGAGAGAAAGGTGTACGCGAACAATGGCGGTGGTTATGATAGTGATGGTGGGACCAGTGGAACTGATAAAAGTAGATTGGTGTTTTTCGAGAGGAAGAATAGTAAGCAGTTTGAGCTGGAGGACTTGCTGAAGGCATCGGCGGAGATGTTGGGGAAAGGGAGTTTGGGAACGGTGTATAAGGCGGTGCTGGATGGTGGTTGTACGGTGGCGGTGAAGAGGTTGAAGGATGCAAATCCGTGTGGGAGGAAGGAGTTTGAGCAGTATATGGATGTGATTGGGAAGTTGAGGCATCCAAATATTGTGAGGTTTAGAGCTTTTTATTATGCTAAGGAAGAGAAGCTTCTTGTTTATGATTATCTGCCCAATGGAAGCTTGCACTCACTTCTTCATGGCAATCGAGGACCGGGGAGAATTCCACTGGATTGGACAACAAGGATCAGCTTGGTACTAGGTGCAGCTCGAGGTCTAGCTCGTATTCATGAAGAGTATGGGGTTACAAAAATCCCTCATGGGAATGTGAAATCATCGAACGTACTACTCGACAAAAATGGTGTTGCTTGTATTGCCGATTTTGGGTTAGCCTTGCTCTTGAACCCAGCTCATGCCACAGCAAGATTGGGAGGATACATGGCACCAGAACAGGCGGAAACTAAGCGACTCTCTCAAAAAGCTGATGTTTACAGCTTTGGAGTTTTGTTACTAGAAGTGCTCACAGGCCGAGCACCATCACAACATCCCTCATCGAGCCATAGACTCGAGGAAGATGAACGAGCCGTTGATTTGCCTAAATGGGTTCGATCGGTGGTGAGGGACGAGTGGACTGCCGAAGTCTTTGATCAAGAGCTCTTGAGGTACAAGAACATTGAGGAAGAGCTTGTTGCAATGCTCCACGTGGCAATGGCTTGTGTGGTGGCGCTTCCAGAGAAACGGCCTACGATGACTGAGGTGGCTAAATTGATAGAGGAGATTAGGGTCGAGCAGTCTCCATTAGGGGAAGATTATGATGAATCGCGCAATTCGCTCTCACCTTCCCTCGCAACCACCGAGGATTGA

Network for GWHGAAZE013312

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13855.7	LRR_8	192	250	1.60E-07
PF00069.26	Pkinase	418	687	4.20E-37

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_LRR-III

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.470
	SRR3591706	second leaf	12.214
	SRR3591707	mature leaf	2.523
	SRR3591708	Shoot apex	31.722
	SRR3591709	Stem	31.766
	SRR3591710	White floral bud	2.557
	SRR3591711	White flower	1.589
	SRR3591712	Green floral bud	5.190
	SRR3591713	Yellow flower	0.243
SRP173429	SRR8316895	Juvenile bud stage	6.597
	SRR8316896	Juvenile bud stage	6.462
	SRR8316897	Juvenile bud stage	3.375
	SRR8316894	Third green stage	3.129
	SRR8316900	Third green stage	4.345
	SRR8316901	Third green stage	3.162
	SRR8316898	Complete white stage	0.738
	SRR8316899	Complete white stage	4.945
	SRR8316903	Complete white stage	1.574
	SRR8316902	Silver flowering stage	0.074
	SRR8316904	Silver flowering stage	0.279
	SRR8316905	Silver flowering stage	0.098
	SRR8316906	Gold flowering stage	0.215
	SRR8316907	Gold flowering stage	0.485
	SRR8316908	Gold flowering stage	0.464
SRP132670	SRR6706286	Control	7.119
	SRR6706287	Light intensity 50%	7.087
	SRR6706288	Light intensity 20%	7.784
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.631
	CNS0095593	Slightly white alabastrum(diploid) 2	3.733
	CNS0095594	Slightly white alabastrum(diploid) 3	5.384
	CNS0095595	Whole white alabastrum(diploid) 2	1.925
	CNS0095596	Whole white alabastrum(diploid) 3	2.410
	CNS0095597	Whole white alabastrum(diploid) 4	1.250
	CNS0095598	Silvery flower (diploied) 1	4.110
	CNS0095599	Silvery flower (diploied) 2	2.736
	CNS0095600	Silvery flower (diploied) 3	1.811
	CNS0095601	Golden flower (diploid) 1	2.027
	CNS0095602	Golden flower (diploid) 2	2.848
	CNS0095603	Golden flower (diploid) 3	2.611
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.132
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.988
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.752
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.318
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.667
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.478
	CNS0095610	Silvery flower (tetraploid) 1	1.085
	CNS0095611	Silvery flower (tetraploid) 2	2.420
	CNS0095612	Silvery flower (tetraploid) 3	1.863
	CNS0095613	Golden flower (tetraploid) 1	0.365
	CNS0095614	Golden flower (tetraploid) 2	1.413
	CNS0095615	Golden flower (tetraploid) 3	0.377
CRA001975	CRR073297	Stem 1	16.199
	CRR073298	Stem 2	15.280
	CRR073299	Stem 3	30.674
	CRR073300	Leaf 1	9.522
	CRR073301	Leaf 2	9.134
	CRR073302	Leaf 3	6.616
	CRR073303	Juvenile bud 1	5.101
	CRR073304	Juvenile bud 2	1.782
	CRR073305	Juvenile bud 3	10.959
	CRR073306	Third green 1	0.933
	CRR073307	Third green 2	0.928
	CRR073308	Third green 3	1.252
	CRR073309	Second white 1	0.886
	CRR073310	Second white 2	0.954
	CRR073311	Second white 3	0.582
	CRR073312	Silver flowering 1	0.680
	CRR073313	Silver flowering 2	0.247
	CRR073314	Silver flowering 3	0.340
	CRR073315	Gold flowering 1	6.376
	CRR073316	Gold flowering 2	8.440
	CRR073317	Gold flowering 3	12.110
	CRR073318	Tawny withering 1	87.959
	CRR073319	Tawny withering 2	38.166
	CRR073320	Tawny withering 3	101.773