Gene detail

Detail information of GWHGAAZE013311

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP15343.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8VZA5\|KDTA_ARATH	1E-178	Probable 3-deoxy-D-manno-octulosonic acid transferase, mitochondrial (Precursor)
trEMBL	tr\|A0A068V634\|A0A068V634_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_98 {ECO:0000313\|EMBL:CDP15343.1}
TAIR10	AT5G03770.1	9E-146	KDO transferase A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100492932	100501577	+
GWHAAZE00000003	mRNA	100492932	100501577	+
GWHAAZE00000003	exon	100492932	100493124	+
GWHAAZE00000003	exon	100493626	100493719	+
GWHAAZE00000003	exon	100494496	100494538	+
GWHAAZE00000003	exon	100495237	100495359	+
GWHAAZE00000003	exon	100495611	100495730	+
GWHAAZE00000003	exon	100495803	100495881	+
GWHAAZE00000003	exon	100496355	100496471	+
GWHAAZE00000003	exon	100497805	100497902	+
GWHAAZE00000003	exon	100498938	100499028	+
GWHAAZE00000003	exon	100500175	100500333	+
GWHAAZE00000003	exon	100500416	100500550	+
GWHAAZE00000003	exon	100501324	100501577	+
GWHAAZE00000003	CDS	100492932	100493124	+
GWHAAZE00000003	CDS	100493626	100493719	+
GWHAAZE00000003	CDS	100494496	100494538	+
GWHAAZE00000003	CDS	100495237	100495359	+
GWHAAZE00000003	CDS	100495611	100495730	+
GWHAAZE00000003	CDS	100495803	100495881	+
GWHAAZE00000003	CDS	100496355	100496471	+
GWHAAZE00000003	CDS	100497805	100497902	+
GWHAAZE00000003	CDS	100498938	100499028	+
GWHAAZE00000003	CDS	100500175	100500333	+
GWHAAZE00000003	CDS	100500416	100500550	+
GWHAAZE00000003	CDS	100501324	100501577	+

Transcript Sequence
>GWHTAAZE013325 ATGGGGGGAGGTGATATAGTATACATGATATACAGAGCATTGAGCTACGGTCTGTCGCCGTTGATAAACTTTCACCTACGTTGGCGAAAACTAAGAGGACTGGAACACCCCATCCGTTGGCCAGAGCGTCTCGGCCGTCCTTCCCTCCCTCGTCCCCACGGTCCACTCCTTTGGTTTCACGCCGTCTCTTTAGGTGAAGGAATGGCTGCAATTCCTGTCGTGAAATGCTGTGTACAGAGAAGACCAGACATTACGGTTTTGATGACGACTACAACAGCGTCTGCATTTGAAGTAATTAAGAACCGGCTCCCAAGTGGTGTCATATATCAGTTTGCTCCACTTGATACACCCTCTGCTATGGATGCTTTCCTTGGCTATTGGAAGCCAAATGCAATCATGTTACTGGAGAGTGAACTATGGCCAAATCTTATTATGGGTGCCTCAAGAAATGGTGTTGAGCTGGTATTATTGAATGGGCGGATGTCAGCAAAATCCTTTAGGAATTGGTCTGCGCCTGTAGTTCTTCAACTGACTTCATTGATGATGTCAAAGTTTTCCTTGATTGTCCCATTGTGCAATAAGCAGGCAATCAATTTTCAGCTTCTGCAAGCGTCGCCATTAATCATTAACTTTTCTGGTGACTTAAAATATGCTATGCAAGAATTTGATGATTCTAAGGGAGGCACAACAAGTATGGAAGATCTGCGGGCACAACTTGCAGGTAGACGGGTTTGGATGGCTTCTTCCATACACAAGGGTGAAGAAAAAGTAATGCTAGGAGTTCACAATGTGCTAAAGCAAATGTACCCTGATATAGTCACTATTATTGTGCCTCGACACCCACAACTTGGACAAGATATTGTTCGTGATTCGCTGAGAGAAGGGATGAATGTGGCATTGAGGTCTCGTCGTGACAAGCTTTTGCCAGGGACAAACATATATGTGGTGGATACATTAGTATGTTTTGAATATGCTCTCCTCTACTTTGTTTTTGCAGGTGAATTGAGAGATTTCTACAGATTAACTCCAATAGCTGTAATTGGAGGTTCTTTCTTGCATGGTTTAGCTGGTCATAATATTTCAGAAGCTGCTGCTGCTGGCTGTGCTGTTTTGACTGGTCATCATCTTGGACATTTCTCACACATGGCACTGGAAATGCGACGATTGAATCCTCTTTCGGTTCTCAAGGTACACCATTTCCGTTTTTGTGCTTTTTTTGCCTTCAAGTTTTATAATTTGGAAAATGCCAGAGTATCTTTTATCATCTTCTCCTTGGGAAAGCGCTTAACTGCACAGATTATGCAGGTTGCTGGGAAAGTTGAGCTTGTAGAAATTCTTGGGGAGCTCTTCAGTAATGCCAAACTTTTGGAAGCACATCGCTCGGCTGCAAAACAAGCTCTCCATGCCCTGTCAAGTGGGATTATCGAAAATGTGTGGAATCTGCTAGATTTCCATATTTTCAGAAAAGCTATTCCAGAAATCCAGACTGTTGAACAACAAAGCTAG

Network for GWHGAAZE013311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04413.17	Glycos_transf_N	39	218	5.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02527	kdtA, waaA	Metabolic pathways	map01100
K02527	kdtA, waaA	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.783
	SRR3591706	second leaf	10.000
	SRR3591707	mature leaf	10.280
	SRR3591708	Shoot apex	9.580
	SRR3591709	Stem	12.044
	SRR3591710	White floral bud	5.882
	SRR3591711	White flower	5.547
	SRR3591712	Green floral bud	4.525
	SRR3591713	Yellow flower	2.717
SRP173429	SRR8316895	Juvenile bud stage	8.948
	SRR8316896	Juvenile bud stage	14.819
	SRR8316897	Juvenile bud stage	6.053
	SRR8316894	Third green stage	5.066
	SRR8316900	Third green stage	13.894
	SRR8316901	Third green stage	10.909
	SRR8316898	Complete white stage	3.056
	SRR8316899	Complete white stage	14.353
	SRR8316903	Complete white stage	3.057
	SRR8316902	Silver flowering stage	0.985
	SRR8316904	Silver flowering stage	0.910
	SRR8316905	Silver flowering stage	0.729
	SRR8316906	Gold flowering stage	3.914
	SRR8316907	Gold flowering stage	3.189
	SRR8316908	Gold flowering stage	2.577
SRP132670	SRR6706286	Control	10.188
	SRR6706287	Light intensity 50%	10.956
	SRR6706288	Light intensity 20%	11.454
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.869
	CNS0095593	Slightly white alabastrum(diploid) 2	11.142
	CNS0095594	Slightly white alabastrum(diploid) 3	11.930
	CNS0095595	Whole white alabastrum(diploid) 2	8.451
	CNS0095596	Whole white alabastrum(diploid) 3	10.325
	CNS0095597	Whole white alabastrum(diploid) 4	8.270
	CNS0095598	Silvery flower (diploied) 1	12.870
	CNS0095599	Silvery flower (diploied) 2	7.064
	CNS0095600	Silvery flower (diploied) 3	7.384
	CNS0095601	Golden flower (diploid) 1	10.542
	CNS0095602	Golden flower (diploid) 2	7.638
	CNS0095603	Golden flower (diploid) 3	7.908
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.375
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.338
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.150
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.164
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.169
	CNS0095609	Whole white alabastrum(tetraploid) 3	10.589
	CNS0095610	Silvery flower (tetraploid) 1	4.294
	CNS0095611	Silvery flower (tetraploid) 2	6.100
	CNS0095612	Silvery flower (tetraploid) 3	3.163
	CNS0095613	Golden flower (tetraploid) 1	1.592
	CNS0095614	Golden flower (tetraploid) 2	4.030
	CNS0095615	Golden flower (tetraploid) 3	1.284
CRA001975	CRR073297	Stem 1	12.910
	CRR073298	Stem 2	12.571
	CRR073299	Stem 3	10.157
	CRR073300	Leaf 1	12.279
	CRR073301	Leaf 2	12.904
	CRR073302	Leaf 3	10.986
	CRR073303	Juvenile bud 1	10.736
	CRR073304	Juvenile bud 2	5.531
	CRR073305	Juvenile bud 3	10.006
	CRR073306	Third green 1	0.850
	CRR073307	Third green 2	0.549
	CRR073308	Third green 3	0.611
	CRR073309	Second white 1	1.501
	CRR073310	Second white 2	2.101
	CRR073311	Second white 3	1.273
	CRR073312	Silver flowering 1	0.450
	CRR073313	Silver flowering 2	1.174
	CRR073314	Silver flowering 3	0.559
	CRR073315	Gold flowering 1	9.996
	CRR073316	Gold flowering 2	15.860
	CRR073317	Gold flowering 3	16.400
	CRR073318	Tawny withering 1	8.068
	CRR073319	Tawny withering 2	11.380
	CRR073320	Tawny withering 3	10.877