Gene detail

Detail information of GWHGAAZE013301

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010683884.1	1.474E-138	PREDICTED: splicing factor U2af small subunit B-like [Beta vulgaris subsp. vulgaris]
Swissprot	tr\|Q9ZQW8\|U2AFA_ORYSJ	3E-113	Splicing factor U2af small subunit A
trEMBL	tr\|D5ABW9\|D5ABW9_PICSI	6E-131	Putative uncharacterized protein {ECO:0000313\|EMBL:ADE77038.1}
TAIR10	AT5G42820.2	2E-90	Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100392741	100397791	-
GWHAAZE00000003	mRNA	100392741	100397791	-
GWHAAZE00000003	exon	100397555	100397791	-
GWHAAZE00000003	exon	100396611	100396667	-
GWHAAZE00000003	exon	100396415	100396525	-
GWHAAZE00000003	exon	100396249	100396330	-
GWHAAZE00000003	exon	100394977	100395103	-
GWHAAZE00000003	exon	100392741	100392960	-
GWHAAZE00000003	CDS	100397555	100397791	-
GWHAAZE00000003	CDS	100396611	100396667	-
GWHAAZE00000003	CDS	100396415	100396525	-
GWHAAZE00000003	CDS	100396249	100396330	-
GWHAAZE00000003	CDS	100394977	100395103	-
GWHAAZE00000003	CDS	100392741	100392960	-

Transcript Sequence
>GWHTAAZE013315 ATGGCGGAGCACTTGGCATCAATATTTGGAACAGAGAAGGACAGAGTGAACTGTCCCTTCTACTTCAAGATCGGAGCCTGTAGGCATGGAGATCGATGCTCTAGACTCCACACCAAGCCCAGCATCAGCCCTACTCTTTTACTTTCAAATATGTACCAGCGCCCCGATTCCATAACTCCCGGCGTTGATCCTCAGGGCCAGCCCCTCGACCCTCGCAAAATCCAAGACCACTTCGAGTTTGGACGTTTAGTTATTTTGATTTGTCGTGTTCTTCGATTCTTGTGGCGATTGATGCTGATTATTTGTATTGAAATGCAGGATTTCTATGAAGATTTATTTGAGGAGCTGGGTAAGTATGGGGAAATTGAGAGCTTGAACATCTGTGATAATTTGGCTGACCACATGGTAGGGAATGTGTATGTGCAGTTTAGAGAGGAAGAGCATGCGGCAAATGCAGTCCAGAATCTGACTGGGAGGTTTTATGCAGGTCGCCCCATCATTGTGGACTTCTCTCCGGTGACGGATTTTCGTGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGAGGTGGCTACTGCAACTTCATGCATCTCAAGAAGATTAGCAAAGAGCTGAGGAGGCAGTTATTTGGGAGGAATAGTAGGCGAAGGCACAGCCGAAGCAGGAGCCGTAGCCCTCAGAGGAACCGGAATTACGACGAACGCCCTCATGGTGGCGGGCGTGGTTATGGCGGACGAAGAGGTGATTATGTGGACCGCCACCACGATCGGGCACGGAGGCCTAGAAGCCGGAGTCCTGGACGGCGCGGCGGACGAAGCAGAAGCCCA

Network for GWHGAAZE013301

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00642.25	zf-CCCH	14	37	4.30E-07
PF00076.23	RRM_1	110	166	1.00E-06
PF00642.25	zf-CCCH	177	200	0.00027

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12836	U2AF1	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0000398	biological_process	mRNA splicing, via spliceosome
GO:0089701	cellular_component	U2AF
GO:0003676	molecular_function	nucleic acid binding
GO:0046872	molecular_function	metal ion binding
GO:0003723	molecular_function	RNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	103.506
	SRR3591706	second leaf	62.139
	SRR3591707	mature leaf	61.960
	SRR3591708	Shoot apex	114.246
	SRR3591709	Stem	103.040
	SRR3591710	White floral bud	96.174
	SRR3591711	White flower	107.297
	SRR3591712	Green floral bud	91.126
	SRR3591713	Yellow flower	114.650
SRP173429	SRR8316895	Juvenile bud stage	107.874
	SRR8316896	Juvenile bud stage	151.512
	SRR8316897	Juvenile bud stage	63.744
	SRR8316894	Third green stage	67.230
	SRR8316900	Third green stage	151.591
	SRR8316901	Third green stage	161.312
	SRR8316898	Complete white stage	69.424
	SRR8316899	Complete white stage	215.907
	SRR8316903	Complete white stage	132.040
	SRR8316902	Silver flowering stage	79.277
	SRR8316904	Silver flowering stage	91.194
	SRR8316905	Silver flowering stage	55.203
	SRR8316906	Gold flowering stage	188.045
	SRR8316907	Gold flowering stage	184.897
	SRR8316908	Gold flowering stage	191.241
SRP132670	SRR6706286	Control	290.531
	SRR6706287	Light intensity 50%	265.782
	SRR6706288	Light intensity 20%	254.779
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	77.992
	CNS0095593	Slightly white alabastrum(diploid) 2	81.569
	CNS0095594	Slightly white alabastrum(diploid) 3	76.300
	CNS0095595	Whole white alabastrum(diploid) 2	66.210
	CNS0095596	Whole white alabastrum(diploid) 3	61.254
	CNS0095597	Whole white alabastrum(diploid) 4	60.633
	CNS0095598	Silvery flower (diploied) 1	90.827
	CNS0095599	Silvery flower (diploied) 2	81.749
	CNS0095600	Silvery flower (diploied) 3	95.795
	CNS0095601	Golden flower (diploid) 1	88.800
	CNS0095602	Golden flower (diploid) 2	112.215
	CNS0095603	Golden flower (diploid) 3	113.306
	CNS0095604	Slightly white alabastrum(tetraploid) 1	102.922
	CNS0095605	Slightly white alabastrum(tetraploid) 2	74.384
	CNS0095606	Slightly white alabastrum(tetraploid) 3	210.925
	CNS0095607	Whole white alabastrum(tetraploid) 1	52.496
	CNS0095608	Whole white alabastrum(tetraploid) 2	34.515
	CNS0095609	Whole white alabastrum(tetraploid) 3	134.207
	CNS0095610	Silvery flower (tetraploid) 1	170.680
	CNS0095611	Silvery flower (tetraploid) 2	122.541
	CNS0095612	Silvery flower (tetraploid) 3	109.453
	CNS0095613	Golden flower (tetraploid) 1	102.756
	CNS0095614	Golden flower (tetraploid) 2	158.266
	CNS0095615	Golden flower (tetraploid) 3	125.290
CRA001975	CRR073297	Stem 1	179.680
	CRR073298	Stem 2	162.224
	CRR073299	Stem 3	113.150
	CRR073300	Leaf 1	193.477
	CRR073301	Leaf 2	197.732
	CRR073302	Leaf 3	91.157
	CRR073303	Juvenile bud 1	102.571
	CRR073304	Juvenile bud 2	74.578
	CRR073305	Juvenile bud 3	139.799
	CRR073306	Third green 1	48.726
	CRR073307	Third green 2	34.873
	CRR073308	Third green 3	45.658
	CRR073309	Second white 1	44.511
	CRR073310	Second white 2	46.113
	CRR073311	Second white 3	40.380
	CRR073312	Silver flowering 1	48.608
	CRR073313	Silver flowering 2	51.391
	CRR073314	Silver flowering 3	47.717
	CRR073315	Gold flowering 1	35.083
	CRR073316	Gold flowering 2	58.679
	CRR073317	Gold flowering 3	26.879
	CRR073318	Tawny withering 1	88.747
	CRR073319	Tawny withering 2	65.637
	CRR073320	Tawny withering 3	91.271