Gene detail

Detail information of GWHGAAZE013294

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_009796283.1	PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic-like isoform X1 [Nicotiana sylvestris]
Swissprot	tr\|Q41058\|GLGB1_PEA	1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic (Precursor)
trEMBL	tr\|K4CQU8\|K4CQU8_SOLLC	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc09g009190.2.1}
TAIR10	AT5G03650.1	starch branching enzyme 2.2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	100208060	100216428	+
GWHAAZE00000003	mRNA	100208060	100216428	+
GWHAAZE00000003	exon	100208060	100208221	+
GWHAAZE00000003	exon	100208335	100208445	+
GWHAAZE00000003	exon	100209905	100210033	+
GWHAAZE00000003	exon	100210414	100210517	+
GWHAAZE00000003	exon	100211186	100211330	+
GWHAAZE00000003	exon	100212310	100212457	+
GWHAAZE00000003	exon	100212884	100212983	+
GWHAAZE00000003	exon	100214239	100214245	+
GWHAAZE00000003	exon	100214522	100214599	+
GWHAAZE00000003	exon	100215237	100215392	+
GWHAAZE00000003	exon	100215484	100215558	+
GWHAAZE00000003	exon	100216342	100216428	+
GWHAAZE00000003	CDS	100208060	100208221	+
GWHAAZE00000003	CDS	100208335	100208445	+
GWHAAZE00000003	CDS	100209905	100210033	+
GWHAAZE00000003	CDS	100210414	100210517	+
GWHAAZE00000003	CDS	100211186	100211330	+
GWHAAZE00000003	CDS	100212310	100212457	+
GWHAAZE00000003	CDS	100212884	100212983	+
GWHAAZE00000003	CDS	100214239	100214245	+
GWHAAZE00000003	CDS	100214522	100214599	+
GWHAAZE00000003	CDS	100215237	100215392	+
GWHAAZE00000003	CDS	100215484	100215558	+
GWHAAZE00000003	CDS	100216342	100216428	+

Transcript Sequence
>GWHTAAZE013308 TTTATTCTACTGAACTATTTGGATGAATCCAGCCATGCCTCAAATAACACTTTGGATGGGCTGAACATGTTTGACGGGACGGAGAGTCATTACTTCCACTCTGGGTCACGTGGTTATCATTGGATGTGGGATTCTCGCCTTTTTAACTATGGACACTGGGAAGTCTTAAGGTATCTTCTTTCAAACGCAAGATGGTGGTTGGATGAATACAAGTTTGATGGGTTCAGATTTGATGGTGTGACTTCAATGATGTACACCCACCATGGGTTGCAGGTAGCATTTACTGGAAATTACCGTGAGTACTTTGGATTGAGAACGGATGTTGATGCTGTGGTTTATTTAATGCTGGTGAATGATGTTATTCATGGACTCTTTCCTGAAGCTGTTTCCATCGGTGAAGATGTCAGTGGAATGCCAACATTCTGTATTCCAGTTCAAGATGGGGGTGTTGGATTTGACTATCGCTTGCATATGGCAATCGCTGATAAATGGATTGAGCTTCTCAAGAAAAGGGATGAAGACTGGCAAATGGGCGATATTGTTCACACGCTTACAAATCGAAGGTGGTCAGAAAAGTGTGTTGCTTATGCTGAAAGTCACGACCAAGCTCTAGTTGGTGATAAAACCATTGCCTTCTGGTTGATGGACAAGGATATGTATGACTTCATGGCTTTGGATAGACCATCAACTCCCCTTATAGACCGGGGAATAGCATTACACAAAATGATCAGACTTGTTACTATGGGATTAGGCGGAGAAGGGTATTTGAATTTCATGGGAAATGAATTTGGTCATCCTGAGTGGATAGATTTCCCTAGGGCCGATCAACATCTTCCTGACGGGAAATTTGTACTGGGAATAACAACAGTTTTGATAAATGCCGGCGTAGATTTGACCTGGATGTGGGGCGATGCAGATTACTTGAGATATCATGGGTTGCAAGAATTTGATCGGGCCATGCAGCATCTTGAGGGCGCCTACAGTTTCATGACTTCTAATCACCAGTATATATCAAGAAAGGATGAAGGAGACAGAGTAATTGCCTTTGAAAGAGGGGACTTGGTTTTTGTTTTCAATTTTCATTGGACTAACAGCTATTCTGACTACCGAGTTGGCTGTTTAAAGCCTGGAAAATATATGGTGGTCTTGGATTCAGATGATCCATTATTTGGAGGGTTCGGTCGAATTGATCACTCCGCTGAGTACTTCACTTTTGAAGGGTTTGATAACCGGCCTAGTTCGTTCATGGTATACGCGCCCTCCAGAACAGCGGTGGTCTACCGTCTCGTTGGAACGAAGTGA

Network for GWHGAAZE013294

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02806.19	Alpha-amylase_C	336	429	1.80E-25

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00700	GBE1, glgB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0003824	molecular_function	catalytic activity
GO:0043169	molecular_function	cation binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	169.355
	SRR3591706	second leaf	194.649
	SRR3591707	mature leaf	200.208
	SRR3591708	Shoot apex	96.866
	SRR3591709	Stem	359.192
	SRR3591710	White floral bud	183.166
	SRR3591711	White flower	306.171
	SRR3591712	Green floral bud	180.970
	SRR3591713	Yellow flower	310.305
SRP173429	SRR8316895	Juvenile bud stage	68.256
	SRR8316896	Juvenile bud stage	85.466
	SRR8316897	Juvenile bud stage	39.323
	SRR8316894	Third green stage	48.968
	SRR8316900	Third green stage	141.993
	SRR8316901	Third green stage	132.360
	SRR8316898	Complete white stage	51.296
	SRR8316899	Complete white stage	169.067
	SRR8316903	Complete white stage	81.864
	SRR8316902	Silver flowering stage	55.355
	SRR8316904	Silver flowering stage	73.041
	SRR8316905	Silver flowering stage	41.199
	SRR8316906	Gold flowering stage	147.370
	SRR8316907	Gold flowering stage	164.308
	SRR8316908	Gold flowering stage	129.764
SRP132670	SRR6706286	Control	104.860
	SRR6706287	Light intensity 50%	142.127
	SRR6706288	Light intensity 20%	149.116
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	64.723
	CNS0095593	Slightly white alabastrum(diploid) 2	74.491
	CNS0095594	Slightly white alabastrum(diploid) 3	60.250
	CNS0095595	Whole white alabastrum(diploid) 2	68.997
	CNS0095596	Whole white alabastrum(diploid) 3	63.545
	CNS0095597	Whole white alabastrum(diploid) 4	64.101
	CNS0095598	Silvery flower (diploied) 1	66.314
	CNS0095599	Silvery flower (diploied) 2	67.496
	CNS0095600	Silvery flower (diploied) 3	122.299
	CNS0095601	Golden flower (diploid) 1	71.580
	CNS0095602	Golden flower (diploid) 2	101.118
	CNS0095603	Golden flower (diploid) 3	92.113
	CNS0095604	Slightly white alabastrum(tetraploid) 1	94.616
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	179.821
	CNS0095607	Whole white alabastrum(tetraploid) 1	46.663
	CNS0095608	Whole white alabastrum(tetraploid) 2	42.389
	CNS0095609	Whole white alabastrum(tetraploid) 3	137.484
	CNS0095610	Silvery flower (tetraploid) 1	115.629
	CNS0095611	Silvery flower (tetraploid) 2	127.930
	CNS0095612	Silvery flower (tetraploid) 3	105.282
	CNS0095613	Golden flower (tetraploid) 1	54.124
	CNS0095614	Golden flower (tetraploid) 2	101.614
	CNS0095615	Golden flower (tetraploid) 3	38.000
CRA001975	CRR073297	Stem 1	89.804
	CRR073298	Stem 2	85.089
	CRR073299	Stem 3	69.861
	CRR073300	Leaf 1	145.441
	CRR073301	Leaf 2	111.474
	CRR073302	Leaf 3	85.664
	CRR073303	Juvenile bud 1	151.157
	CRR073304	Juvenile bud 2	106.132
	CRR073305	Juvenile bud 3	150.861
	CRR073306	Third green 1	47.587
	CRR073307	Third green 2	29.283
	CRR073308	Third green 3	42.915
	CRR073309	Second white 1	54.682
	CRR073310	Second white 2	75.770
	CRR073311	Second white 3	76.899
	CRR073312	Silver flowering 1	32.465
	CRR073313	Silver flowering 2	35.394
	CRR073314	Silver flowering 3	35.464
	CRR073315	Gold flowering 1	90.452
	CRR073316	Gold flowering 2	153.995
	CRR073317	Gold flowering 3	65.309
	CRR073318	Tawny withering 1	59.662
	CRR073319	Tawny withering 2	64.816
	CRR073320	Tawny withering 3	56.559