Detail information of GWHGAAZE013253


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011094556.14.3122E-121PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 isoform X1 [Sesamum indicum]
Swissprottr|Q9SCP9|VP371_ARATH2E-96Vacuolar protein-sorting-associated protein 37 homolog 1
trEMBLtr|V4WHD4|V4WHD4_9ROSI7E-109Uncharacterized protein {ECO:0000313|EMBL:ESR66119.1}
TAIR10AT3G53120.15E-76Modifier of rudimentary (Mod(r)) protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9950812999514100+
GWHAAZE00000003mRNA9950812999514100+
GWHAAZE00000003exon9950812999508145+
GWHAAZE00000003exon9950911099509319+
GWHAAZE00000003exon9951038999510476+
GWHAAZE00000003exon9951137799511416+
GWHAAZE00000003exon9951231599512361+
GWHAAZE00000003exon9951249099512610+
GWHAAZE00000003exon9951393799514100+
GWHAAZE00000003CDS9950812999508145+
GWHAAZE00000003CDS9950911099509319+
GWHAAZE00000003CDS9951038999510476+
GWHAAZE00000003CDS9951137799511416+
GWHAAZE00000003CDS9951231599512361+
GWHAAZE00000003CDS9951249099512610+
GWHAAZE00000003CDS9951393799514100+
Transcript Sequence

Network for GWHGAAZE013253

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF07200.14Mod_r732159.20E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12185VPS37 Endocytosis map04144

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf55.484
SRR3591706second leaf26.699
SRR3591707mature leaf24.690
SRR3591708Shoot apex25.870
SRR3591709Stem55.908
SRR3591710White floral bud52.692
SRR3591711White flower52.745
SRR3591712Green floral bud38.772
SRR3591713Yellow flower44.912
SRP173429 SRR8316895Juvenile bud stage 23.442
SRR8316896Juvenile bud stage 34.310
SRR8316897Juvenile bud stage 16.996
SRR8316894Third green stage 15.829
SRR8316900Third green stage 38.270
SRR8316901Third green stage 42.597
SRR8316898Complete white stage 35.481
SRR8316899Complete white stage 76.969
SRR8316903Complete white stage 37.594
SRR8316902Silver flowering stage34.108
SRR8316904Silver flowering stage35.799
SRR8316905Silver flowering stage18.271
SRR8316906Gold flowering stage 75.634
SRR8316907Gold flowering stage 77.185
SRR8316908Gold flowering stage 83.637
SRP132670SRR6706286Control49.462
SRR6706287Light intensity 50%45.381
SRR6706288Light intensity 20%47.458
CNP0000432CNS0095592Slightly white alabastrum(diploid) 122.663
CNS0095593Slightly white alabastrum(diploid) 228.271
CNS0095594Slightly white alabastrum(diploid) 324.353
CNS0095595Whole white alabastrum(diploid) 223.387
CNS0095596Whole white alabastrum(diploid) 319.699
CNS0095597Whole white alabastrum(diploid) 422.405
CNS0095598Silvery flower (diploied) 136.956
CNS0095599Silvery flower (diploied) 235.320
CNS0095600Silvery flower (diploied) 349.195
CNS0095601Golden flower (diploid) 130.734
CNS0095602Golden flower (diploid) 245.930
CNS0095603Golden flower (diploid) 350.680
CNS0095604Slightly white alabastrum(tetraploid) 128.015
CNS0095605Slightly white alabastrum(tetraploid) 218.663
CNS0095606Slightly white alabastrum(tetraploid) 334.795
CNS0095607Whole white alabastrum(tetraploid) 120.223
CNS0095608Whole white alabastrum(tetraploid) 221.267
CNS0095609Whole white alabastrum(tetraploid) 326.346
CNS0095610Silvery flower (tetraploid) 140.522
CNS0095611Silvery flower (tetraploid) 237.413
CNS0095612Silvery flower (tetraploid) 338.357
CNS0095613Golden flower (tetraploid) 126.235
CNS0095614Golden flower (tetraploid) 241.165
CNS0095615Golden flower (tetraploid) 360.193
CRA001975CRR073297Stem 141.496
CRR073298Stem 232.060
CRR073299Stem 346.705
CRR073300Leaf 144.015
CRR073301Leaf 242.414
CRR073302Leaf 348.909
CRR073303Juvenile bud 153.092
CRR073304Juvenile bud 248.630
CRR073305Juvenile bud 343.606
CRR073306Third green 1106.893
CRR073307Third green 2105.994
CRR073308Third green 394.826
CRR073309Second white 1108.519
CRR073310Second white 293.648
CRR073311Second white 379.430
CRR073312Silver flowering 187.132
CRR073313Silver flowering 2101.223
CRR073314Silver flowering 371.465
CRR073315Gold flowering 123.712
CRR073316Gold flowering 220.919
CRR073317Gold flowering 323.442
CRR073318Tawny withering 164.058
CRR073319Tawny withering 257.630
CRR073320Tawny withering 357.953