Gene detail

Detail information of GWHGAAZE013232

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009797896.1	1.1424E-152	PREDICTED: splicing factor 3A subunit 2-like [Nicotiana sylvestris]
trEMBL	tr\|A0A022RM87\|A0A022RM87_ERYGU	6E-145	Uncharacterized protein {ECO:0000313\|EMBL:EYU41592.1}
TAIR10	AT2G32600.1	4E-98	hydroxyproline-rich glycoprotein family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	99059923	99066945	+
GWHAAZE00000003	mRNA	99059923	99066945	+
GWHAAZE00000003	exon	99059923	99060141	+
GWHAAZE00000003	exon	99060252	99060421	+
GWHAAZE00000003	exon	99063263	99063339	+
GWHAAZE00000003	exon	99064799	99064864	+
GWHAAZE00000003	exon	99065584	99065658	+
GWHAAZE00000003	exon	99065762	99065876	+
GWHAAZE00000003	exon	99066502	99066577	+
GWHAAZE00000003	exon	99066681	99066945	+
GWHAAZE00000003	five_prime_UTR	99059923	99059989	+
GWHAAZE00000003	CDS	99059990	99060141	+
GWHAAZE00000003	CDS	99060252	99060421	+
GWHAAZE00000003	CDS	99063263	99063339	+
GWHAAZE00000003	CDS	99064799	99064864	+
GWHAAZE00000003	CDS	99065584	99065658	+
GWHAAZE00000003	CDS	99065762	99065876	+
GWHAAZE00000003	CDS	99066502	99066577	+
GWHAAZE00000003	CDS	99066681	99066945	+

Transcript Sequence
>GWHTAAZE013246 ACTTGTTAGGTCTCAATTTGAGTGTGTGAGGTGAGAAGCAAGCGAGCGACACCCATCAAAGCAAAGAATGGACAGAGAATGGGGTTCGAAGCCTGGAAGCGGAGGGGCAGCCTCCGCCCAGAACGAAGCCATAGACCGCCGTGAGCGGCTGAGGAGGCTAGCCCTCGAAACCATAGATCTCGCCAAAGATCCCTATTTCATGCGTAACCATCTCGGCAGTTATGAGTGCAAGCTATGTTTGACACTGCACAACAATGAGGGGAATTACTTGGCACACACACAAGGCAAGAGACATCAGACCAATTTGGCCAAGCGTGCTGCTCGCGAGGCTAAGGATGCACCCGCTCAGCCTCAGCCCCACAAGCGCAAAGTCAATCTCCGCAAGACTGTTAAAATTGGTAGGCCCGGTTACAGGGTAACAAAGCAGTTTGATCCAGAGATGAAGCAGCGTTCCCTTCTCTTCCAGATTGAATATCCTGAAATTGAAGACAACACAAAACCGAGGCATCGATTTATGTCATCCGTTGAGCAGAGGGTCCAATCCTTTGATAAAAGATATCAGTATCTGCTGTTTGCAGCTGAACCATATGAGATCATTTCCTTCAAGGTCCCTAGTACAGAGATTGACAAATCGACTCCCAAGTTCTTCTCGCATTGGGATCCAGATTCTAAAATGTTCACGGTTCGTTTATATACCCTTCTTCCAACTAAATCTGGCTCCTTTGCAGTTATACTTCAAAACAAAGCCACCGGAGACGAACAAACCCCAACCTGCTCCTCCTGCTGCCAATGGAACAGGGGCCCTCCACCACCTGCACCTGGATCTTTGCCACCACCACCTCCGATGTCTAACGGGCCAAGGCCTATGCCGCCAGGCGGAACCCTACCTGCACCACCACCTCCACCGGTTGGTGGTGGTTCAATGGCCAACTTTACCCCCGGCAGTCAGATGGGCAGGCCTCCAATGCCGCCGCCTCCACAAGGTTTTCAGGGCCAGCAACATATGCAGATGCAGCAGGGCCAGGGGCATCGACCACCACCGCCACCTCCCAATATGGGATAA

Network for GWHGAAZE013232

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12874.8	zf-met	52	76	1.90E-06
PF16835.6	SF3A2	110	204	1.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12826	SF3A2, SAP62	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005634	cellular_component	nucleus
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	45.201
	SRR3591706	second leaf	39.081
	SRR3591707	mature leaf	41.055
	SRR3591708	Shoot apex	68.475
	SRR3591709	Stem	51.357
	SRR3591710	White floral bud	50.931
	SRR3591711	White flower	73.807
	SRR3591712	Green floral bud	40.096
	SRR3591713	Yellow flower	53.250
SRP173429	SRR8316895	Juvenile bud stage	33.357
	SRR8316896	Juvenile bud stage	42.903
	SRR8316897	Juvenile bud stage	24.057
	SRR8316894	Third green stage	14.682
	SRR8316900	Third green stage	37.204
	SRR8316901	Third green stage	39.588
	SRR8316898	Complete white stage	13.896
	SRR8316899	Complete white stage	41.488
	SRR8316903	Complete white stage	30.735
	SRR8316902	Silver flowering stage	26.474
	SRR8316904	Silver flowering stage	29.234
	SRR8316905	Silver flowering stage	13.473
	SRR8316906	Gold flowering stage	42.368
	SRR8316907	Gold flowering stage	57.311
	SRR8316908	Gold flowering stage	60.830
SRP132670	SRR6706286	Control	56.232
	SRR6706287	Light intensity 50%	55.389
	SRR6706288	Light intensity 20%	54.673
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	50.796
	CNS0095593	Slightly white alabastrum(diploid) 2	51.710
	CNS0095594	Slightly white alabastrum(diploid) 3	49.265
	CNS0095595	Whole white alabastrum(diploid) 2	39.703
	CNS0095596	Whole white alabastrum(diploid) 3	32.649
	CNS0095597	Whole white alabastrum(diploid) 4	33.896
	CNS0095598	Silvery flower (diploied) 1	58.883
	CNS0095599	Silvery flower (diploied) 2	56.541
	CNS0095600	Silvery flower (diploied) 3	65.846
	CNS0095601	Golden flower (diploid) 1	57.089
	CNS0095602	Golden flower (diploid) 2	63.652
	CNS0095603	Golden flower (diploid) 3	66.925
	CNS0095604	Slightly white alabastrum(tetraploid) 1	51.939
	CNS0095605	Slightly white alabastrum(tetraploid) 2	49.017
	CNS0095606	Slightly white alabastrum(tetraploid) 3	69.379
	CNS0095607	Whole white alabastrum(tetraploid) 1	39.096
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.013
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.696
	CNS0095610	Silvery flower (tetraploid) 1	59.398
	CNS0095611	Silvery flower (tetraploid) 2	71.577
	CNS0095612	Silvery flower (tetraploid) 3	74.774
	CNS0095613	Golden flower (tetraploid) 1	49.327
	CNS0095614	Golden flower (tetraploid) 2	58.748
	CNS0095615	Golden flower (tetraploid) 3	61.772
CRA001975	CRR073297	Stem 1	60.688
	CRR073298	Stem 2	56.744
	CRR073299	Stem 3	69.561
	CRR073300	Leaf 1	40.055
	CRR073301	Leaf 2	41.380
	CRR073302	Leaf 3	37.677
	CRR073303	Juvenile bud 1	39.766
	CRR073304	Juvenile bud 2	35.033
	CRR073305	Juvenile bud 3	54.741
	CRR073306	Third green 1	58.377
	CRR073307	Third green 2	60.004
	CRR073308	Third green 3	54.691
	CRR073309	Second white 1	85.647
	CRR073310	Second white 2	70.201
	CRR073311	Second white 3	61.496
	CRR073312	Silver flowering 1	61.532
	CRR073313	Silver flowering 2	63.260
	CRR073314	Silver flowering 3	57.559
	CRR073315	Gold flowering 1	37.220
	CRR073316	Gold flowering 2	44.888
	CRR073317	Gold flowering 3	35.235
	CRR073318	Tawny withering 1	56.228
	CRR073319	Tawny withering 2	57.595
	CRR073320	Tawny withering 3	61.416