Gene detail

Detail information of GWHGAAZE013217

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011082106.1	PREDICTED: L-arabinokinase-like [Sesamum indicum]
Swissprot	tr\|O23461\|ARAK_ARATH	L-arabinokinase
trEMBL	tr\|A0A068UH85\|A0A068UH85_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_29 {ECO:0000313\|EMBL:CDP07930.1}
TAIR10	AT4G16130.1	arabinose kinase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98853471	98886923	+
GWHAAZE00000003	mRNA	98853471	98886923	+
GWHAAZE00000003	exon	98853471	98853473	+
GWHAAZE00000003	exon	98855577	98855684	+
GWHAAZE00000003	exon	98855768	98855836	+
GWHAAZE00000003	exon	98856238	98856321	+
GWHAAZE00000003	exon	98857121	98857197	+
GWHAAZE00000003	exon	98862358	98862424	+
GWHAAZE00000003	exon	98864697	98864754	+
GWHAAZE00000003	exon	98865172	98865239	+
GWHAAZE00000003	exon	98865338	98865400	+
GWHAAZE00000003	exon	98865739	98865792	+
GWHAAZE00000003	exon	98866396	98866498	+
GWHAAZE00000003	exon	98866618	98866727	+
GWHAAZE00000003	exon	98867213	98867332	+
GWHAAZE00000003	exon	98868877	98868933	+
GWHAAZE00000003	exon	98870123	98870295	+
GWHAAZE00000003	exon	98870659	98870827	+
GWHAAZE00000003	exon	98872251	98872334	+
GWHAAZE00000003	exon	98872598	98872723	+
GWHAAZE00000003	exon	98874109	98874239	+
GWHAAZE00000003	exon	98874317	98874398	+
GWHAAZE00000003	exon	98874890	98874977	+
GWHAAZE00000003	exon	98876082	98876125	+
GWHAAZE00000003	exon	98876438	98876533	+
GWHAAZE00000003	exon	98876819	98876895	+
GWHAAZE00000003	exon	98878262	98878462	+
GWHAAZE00000003	exon	98879216	98879381	+
GWHAAZE00000003	exon	98882670	98882741	+
GWHAAZE00000003	exon	98885681	98885884	+
GWHAAZE00000003	exon	98886807	98886923	+
GWHAAZE00000003	CDS	98853471	98853473	+
GWHAAZE00000003	CDS	98855577	98855684	+
GWHAAZE00000003	CDS	98855768	98855836	+
GWHAAZE00000003	CDS	98856238	98856321	+
GWHAAZE00000003	CDS	98857121	98857197	+
GWHAAZE00000003	CDS	98862358	98862424	+
GWHAAZE00000003	CDS	98864697	98864754	+
GWHAAZE00000003	CDS	98865172	98865239	+
GWHAAZE00000003	CDS	98865338	98865400	+
GWHAAZE00000003	CDS	98865739	98865792	+
GWHAAZE00000003	CDS	98866396	98866498	+
GWHAAZE00000003	CDS	98866618	98866727	+
GWHAAZE00000003	CDS	98867213	98867332	+
GWHAAZE00000003	CDS	98868877	98868933	+
GWHAAZE00000003	CDS	98870123	98870295	+
GWHAAZE00000003	CDS	98870659	98870827	+
GWHAAZE00000003	CDS	98872251	98872334	+
GWHAAZE00000003	CDS	98872598	98872723	+
GWHAAZE00000003	CDS	98874109	98874239	+
GWHAAZE00000003	CDS	98874317	98874398	+
GWHAAZE00000003	CDS	98874890	98874977	+
GWHAAZE00000003	CDS	98876082	98876125	+
GWHAAZE00000003	CDS	98876438	98876533	+
GWHAAZE00000003	CDS	98876819	98876895	+
GWHAAZE00000003	CDS	98878262	98878462	+
GWHAAZE00000003	CDS	98879216	98879381	+
GWHAAZE00000003	CDS	98882670	98882741	+
GWHAAZE00000003	CDS	98885681	98885884	+
GWHAAZE00000003	CDS	98886807	98886923	+

Transcript Sequence
>GWHTAAZE013231 ATGGTTGTTCGAAATCTCATTCTTGCTGGCCATGATGTGCATGTGGTCACCGGTGCACCTGACTATGTCTTTACCACCGAAATACAATCTCCTCGACTCTTCCTTCGCAAGGAACTCTTAGACTGTGGGGCTGTTCAAGCAGATGCTTTGACTGTTGATCGCCTTGCTTCTTTGGAGAAGTATATGGAGACAGCTGTAGTACCTCGGGCTTCTATTTTGGAGATGGAAGTAAAGTGGCTGAACACTATCAAGGCAGACTTAGTGGTTTCGGATGTTGTTCCAGTTGCTTGTCGTGCAGCAACTGATGCTGGAATTCGCTCTGTTTGTTGTACAAACTTCAGTTGGGACTTCATATATGCTGAATATGTGATGGCCGCTGGCTATGATCATAGGTCAATAGTTTGGCAGATAGCAGAGGATTATTCTCATTGCCAATTCCTAATCCGCCTCCCGGGATACTGTCCAATGCCTGCTTTTCGTGATGTGATTGACGTACCTTTGGTTGTTAGGAGGTTGCACAAATCTCGCCAGGAGGTGAGGAAGGAACTTGGAATTGGGGAGGATGTCAAGGTTGTTATCCTCAACTTTGGTGGACAACCAGCAGGTTGGAAATTGGAGAAGGATTACTTGCCTCCTGGTTGGCTATGCCTGGTTTGTGGTGGATCTACCAACCAGGAACTTCCTCCAAATTTCATAAAGCTTGAGAAAGATGTGTACACACCTGATGTTATGGCAGCATCTGACTGTATGCTCGGAAAAATTGGATATGGCACGGTTAGCGAAGCCCTGGCGTACAAATTACCATTTGTCTTTGTGCGTAGAGATTACTTCAATGAAGAGCCTTTTTTGAGAAATATGCTTGAGTTCTATCACGGTGGCGTTGAGATGATTAGGCGGGATCTACTGACTGGACATTGGAGACCATACCTTGAACGTGCAGTTAGTTTGAAACCCTCTTACGAGGGGGGCGTTAATGGCGGTGAGGTTGCAGCTCGTATTTTGCAGGATACAGCTACTGGAAAACATCATTCATTGGATAAGCTTAGCGGTGCAAGAAGATTGCGTGATGCTATAGTTCTTGGGTATCAATTACAAAGAGTCCCAGGAAGAGATATTTGCATCCCAGATTGGTACTCAAGTGCTGAAAATGAACTCGGTCTTCGTAAAGGAACACCAACTTCTGAAACCAATGACACTAGCTTCACTACAAGCTTATACACCGGGGACTTTGAGATTCTTCATGGAGATCTTATGGGTCTGTCAGATACAATGAGTTTCCTACAGAGCTTATCAGAACTAGATGAAGTAAATGATTCTGGAAAGAATACTGAGAAGCGCCACATCCGGGAGCGTGTGGCAGCTGGTACTCTCTTCAATTGGGAGGAAGACATCATTGTGGCAAGAGCACCCGGAAGGCTGGATGTTGTGGGTGGGATTGCGGACTATTCAGGGAGTCTTGTGTTGCAGATGCCTATTCGAGAAGCTTGTCATGTTGCTGTTCAAAATATTCATCCAAGTAAACAGAGACTTTGGAAACATGCCCAGGCTCGAAAGCTGGACAATGGACAAGTATCAACGCCTGTTTTGCAAATCGTTTCATACGGATCAGAATTGAGCAACCGTGCTCCAACCTTTGACATGGATATATCGGACTTTATGGATGGTGAGGAGCCAATTTCATATGAAAAGGCGAAAGGTTTCTTTGCCAAAGATCCGGCCCAAAAATGGGCTGCATATGTTGCTGGAACAATTCTGGTTTTAATGAAAGAAGTGGGCGTACGCTTCGAAAACAGCATCAGCATGCTGGTTTCTTCTGCTGTTCCAGAAGGAAAAGGTGTATCTTCCTCTGCCTCTGTGGAAGTTGCAAGCATGTCTGCTATAGCCGCTGCTTTTGGATTGAAACTCGGCCCAAAGGAACTTGCCTTGCTCTGCCAAAAGGTTGAGAACAACGTTGTTGGTGCACCATGCGGTGTAATGGACCAGATGGCTTCAGCTTGTGGTGAAGCAAACAAACTTCTTGCAATGGTTTGCCAGCCTGCTGAGGTATTAGGGCTTGTAGATATTCCTAGTCATATTCGATTTTGGGGAATTGATTCAGGTATACGGCACAGTATTGGAGGTGCAGATTATGGATCTGTTAGAATAGGAGCCTTTATGGGTCGAAAAATGGTAAAAACTACTGCATCTTCAATGTTGTCCCAATCTTCGTCAAATGCTAATGGGACAAACCCTGATGAGCTTGAAGATATTGGTGTTGAACTACTTGAATCTGAAGCTTCTTTAGATTACTTGTGCAACCTCTCACCTCACAGATATGAATCTCTCTATGCTAATATGCTTCCGGATTCTATGCCTGGCGACACATTTTTGGAGAAATATTCTGATCACAATGATCCAGTCACTGTCATTGATAAGAAGCGCAATTATGGAGTAAAAGCATCTGCTAGACACCCTGTCTATGAAAATTTCCGAGTGAAGGCCTTCAAAGCACTACTAACATCTGCAATGTCAGCTGAGCAGCTTACCTCTCTCGGAGAACTAATGTATCAGTGCCATTACAGTTACAATGCGTGCGGGCTTGGGTCCGATGGGACAGATAGACTTGTCCAATTGGTGCAAGAAGCTCAGCACAGTAAAATGTCTGAATCTGCTGATGGAACTTTATTCGGAGCCAAGATTACAGGTGGTGGGTCTGGTGGAACGGTTTGCGTCATTGGGCGGAATTGTTTACGGAGTAGCGAACAAATTATTCAGATTCAGCAGAGATACAAAAATGCGACTGGCTATCTACCGTTTGTTTTTGAGGGTTCATCACCTGGTGCAGGAAAGTTCGGTCACCTGAGAATTCGTCGCCGTCCCAAGAAAAATTAA

Network for GWHGAAZE013217

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF10509.10	GalKase_gal_bdg	461	501	4.30E-06
PF00288.27	GHMP_kinases_N	602	667	3.80E-11
PF08544.14	GHMP_kinases_C	835	923	5.80E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12446	E2.7.1.46	Metabolic pathways	map01100
K12446	E2.7.1.46	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005534	molecular_function	galactose binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	20.664
	SRR3591706	second leaf	7.424
	SRR3591707	mature leaf	6.045
	SRR3591708	Shoot apex	12.670
	SRR3591709	Stem	27.218
	SRR3591710	White floral bud	35.448
	SRR3591711	White flower	55.024
	SRR3591712	Green floral bud	29.963
	SRR3591713	Yellow flower	289.857
SRP173429	SRR8316895	Juvenile bud stage	27.498
	SRR8316896	Juvenile bud stage	41.911
	SRR8316897	Juvenile bud stage	15.017
	SRR8316894	Third green stage	16.022
	SRR8316900	Third green stage	36.844
	SRR8316901	Third green stage	33.066
	SRR8316898	Complete white stage	14.103
	SRR8316899	Complete white stage	18.089
	SRR8316903	Complete white stage	32.668
	SRR8316902	Silver flowering stage	36.490
	SRR8316904	Silver flowering stage	59.532
	SRR8316905	Silver flowering stage	35.502
	SRR8316906	Gold flowering stage	113.382
	SRR8316907	Gold flowering stage	102.799
	SRR8316908	Gold flowering stage	91.379
SRP132670	SRR6706286	Control	47.399
	SRR6706287	Light intensity 50%	42.714
	SRR6706288	Light intensity 20%	38.146
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.580
	CNS0095593	Slightly white alabastrum(diploid) 2	14.899
	CNS0095594	Slightly white alabastrum(diploid) 3	20.703
	CNS0095595	Whole white alabastrum(diploid) 2	14.724
	CNS0095596	Whole white alabastrum(diploid) 3	16.567
	CNS0095597	Whole white alabastrum(diploid) 4	15.530
	CNS0095598	Silvery flower (diploied) 1	43.573
	CNS0095599	Silvery flower (diploied) 2	33.576
	CNS0095600	Silvery flower (diploied) 3	117.363
	CNS0095601	Golden flower (diploid) 1	61.957
	CNS0095602	Golden flower (diploid) 2	205.552
	CNS0095603	Golden flower (diploid) 3	198.006
	CNS0095604	Slightly white alabastrum(tetraploid) 1	24.626
	CNS0095605	Slightly white alabastrum(tetraploid) 2	19.442
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.413
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.697
	CNS0095608	Whole white alabastrum(tetraploid) 2	22.419
	CNS0095609	Whole white alabastrum(tetraploid) 3	44.624
	CNS0095610	Silvery flower (tetraploid) 1	161.266
	CNS0095611	Silvery flower (tetraploid) 2	183.730
	CNS0095612	Silvery flower (tetraploid) 3	164.319
	CNS0095613	Golden flower (tetraploid) 1	259.005
	CNS0095614	Golden flower (tetraploid) 2	285.650
	CNS0095615	Golden flower (tetraploid) 3	740.113
CRA001975	CRR073297	Stem 1	46.317
	CRR073298	Stem 2	44.521
	CRR073299	Stem 3	40.365
	CRR073300	Leaf 1	38.814
	CRR073301	Leaf 2	41.315
	CRR073302	Leaf 3	33.092
	CRR073303	Juvenile bud 1	26.798
	CRR073304	Juvenile bud 2	22.755
	CRR073305	Juvenile bud 3	34.279
	CRR073306	Third green 1	63.269
	CRR073307	Third green 2	45.882
	CRR073308	Third green 3	49.930
	CRR073309	Second white 1	80.944
	CRR073310	Second white 2	91.495
	CRR073311	Second white 3	107.931
	CRR073312	Silver flowering 1	128.045
	CRR073313	Silver flowering 2	106.105
	CRR073314	Silver flowering 3	158.497
	CRR073315	Gold flowering 1	6.489
	CRR073316	Gold flowering 2	10.801
	CRR073317	Gold flowering 3	8.092
	CRR073318	Tawny withering 1	17.889
	CRR073319	Tawny withering 2	13.434
	CRR073320	Tawny withering 3	15.228