Gene detail

Detail information of GWHGAAZE013208

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011077318.1	PREDICTED: ABC transporter B family member 1 [Sesamum indicum]
Swissprot	tr\|Q9ZR72\|AB1B_ARATH	ABC transporter B family member 1
trEMBL	tr\|F6HKB3\|F6HKB3_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB55335.1}
TAIR10	AT2G36910.1	ATP binding cassette subfamily B1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98648775	98657140	-
GWHAAZE00000003	mRNA	98648775	98657140	-
GWHAAZE00000003	exon	98656504	98657140	-
GWHAAZE00000003	exon	98656362	98656416	-
GWHAAZE00000003	exon	98655861	98656012	-
GWHAAZE00000003	exon	98655302	98655502	-
GWHAAZE00000003	exon	98654935	98655194	-
GWHAAZE00000003	exon	98654372	98654688	-
GWHAAZE00000003	exon	98653521	98653744	-
GWHAAZE00000003	exon	98651856	98652157	-
GWHAAZE00000003	exon	98650674	98651388	-
GWHAAZE00000003	exon	98648775	98650031	-
GWHAAZE00000003	five_prime_UTR	98656933	98657140	-
GWHAAZE00000003	CDS	98656504	98656932	-
GWHAAZE00000003	CDS	98656362	98656416	-
GWHAAZE00000003	CDS	98655861	98656012	-
GWHAAZE00000003	CDS	98655302	98655502	-
GWHAAZE00000003	CDS	98654935	98655194	-
GWHAAZE00000003	CDS	98654372	98654688	-
GWHAAZE00000003	CDS	98653521	98653744	-
GWHAAZE00000003	CDS	98651856	98652157	-
GWHAAZE00000003	CDS	98650674	98651388	-
GWHAAZE00000003	CDS	98648775	98650031	-

Transcript Sequence
>GWHTAAZE013222 CACAATCAGGAACTGAAGATACAACCCAAACAGTAAAAAAATAAATAAGAAAAACGCTTCTTTCCAAATTCCAAACTGGGATATGTTGAAGTGTTAGAGTAAATGAAGAGAGAGAAAGAATTTTACTAAATGTAGAGAGAGAAAGAGAGGGCAAACTTTGACTCCAAACTCTTGGAAAGAGATATAAAAGAAGGTGAACTACAAAGCAATGTCACAAAATTCTCAAGAGATAAAGATCACTGAGCAGTGGAAATGGTCTGAAATGCAAGGCCTTGAACTTCTAGAGAGAGAAAAAGAAAGAACCCAAGATTTATTTGTAGAGAGAGAATTAGGTACTACTGAGAGTGAGAACGGGGGAGGAGAGAGAAAGAAGGAAATGGAAGTGGTTTCTGAGGAAAAAAAAGATGGTGGTAATGGGAGAGAAGAAAAGCCTAATTCTCTTTCTCCTCCATCTGGGTTTCTTGAACTTTTTAGATTTGCAGATAAATTGGACTACTTTTTAATGGGAATTGGAACGATTGGTGCCTTTGTTCATGGCTCTTCTTTGCCATTGTTCCTCAGATTCTTTGCTGATCTTGTTAACTCTTTTGGGTCCAATGCTAACGATATTGATAAAATGACACATGAAGTTCTAAAGTATGCATTTTATTTTCTCATAGTTGGAGCTGCAATATGGGCTTCTTCATGGGCAGGAGAGAGACAATCAACAAAGATGAGGATTAAGTACCTAGAATCAGCACTGAACCAAGATATTCAATACTTTGATACAGAAGTTCGAACTTCCGATGTAGTTTTTGCCATTAATACCGAAGCTGTGTTGGTCCAAGATGCCATTAGTGAAAAGTTGGGTAATTTCATACATTATATGGCAACATTTGTGTCTGGATTTGTGGTGGGTTTTACTGCCGTGTGGCAGTTAGCACTCGTTACACTTGCTGTGGTTCCACTCATAGCAGTAATTGGTGGTATACACACCGCCACCCTATCCAATCTCTCTTCCAAGAGCCAAGAATCTCTTTCGCAAGCTGGTAACATAGCCGAACAGACGATACTTCAAATTCGGACAGTTTTTGCATTTGTGGGTGAATCAAGAGCGTTACAAGCTTACTCCTCGGCATTGAGGGTAGCTCAGAAGCTTGGTTACAAGAGCGGATTTTCGAAGGGATTGGGATTAGGGGCAACTTATTTTACAGTATTTTGTTGTTATGCTCTTTTGCTTTGGTATGGAGGTTATTTGGTTAGGCACCATTATACCAATGGAGGCCTTGCCATTGCCACAATGTTCGCCGTTATGCTAGGTGGAATTGCTTTAGGACAATCTGCTCCAAGCATGGCTGCATTTGCCAAGGCAAGAGTAGCAGCTGCTAAAATCTTCCGAATAATCGACCACAAACCAAGTGTCGACAGGAACAGCGAATCAGGCTTGGAATTAGACTCTGTTTCGGGGCAATTAGAGCTTAGAAACGTCGAATTCTCGTACCCTTCGAGGCCGGATGTTCAAATCCTCAACAATTTCTCACTAAGTGTCCCCTCCGGCAAGACCATAGCTTTGGTCGGTAGCAGTGGCTCCGGTAAAAGCACCGTGGTTTCCCTCATCGAGAGATTTTACGATCCCGCCTCTGGACAAGTTCTATTGGATGGGCATGACATTAAGGCATTAAAGCTGAGATGGCTAAGGCAGCAAATTGGGCTAGTGAGCCAAGAGCCTGCTTTGTTTGCTACCACCATTAAAGAAAACATACTCTTGGGTAGGCCCGAGGCAACCCTGGACGAGATTGAAGAAGCTGCCCAAGTCGCCAATGCCCATTCTTTCATCATCAAGCTCCCTGACGGCTACGATACTCAGAACCCGGCGATCCTTCTTTTGGACGAGGCAACAAGTGCATTGGACTCTGAATCGGAGAAGCTAGTGCAAGAGGCTCTTGACCGGTTCATGATTGGGAGGACAACTCTCGTTATTGCCCACCGACTCTCCACCATCCGGAAGGCTGACCTTGTTGCCGTACTTCAGCAGGGAAGCGTGTCTGAGATCGGGACCCACGACGAACTCTTTGCCAAAGGAGATAGCGGCATCTATGCCAAGCTTATCCGAATGCAAGAAGTGGCTCACGAAACCGCTCTTAATAACGCTCGAAAGAGTAGTGCAAGGCCTTCTAGTGCAAGGAACTCAGTAAGTTCACCCATAATTACTCGTAACTCCTCCTACGGCCGATCACCATACTCGCGCCGCTTATCCGACTTCTCGACCTCCGACTTTAGCCTATCAATGGACGCCACATACCCCAATTACCGCCATGAAAAGCTTCCGTTCAAAGAGCAAGCCAGTTCTTTCTGGCGACTGGCAAAAATGAACTCGCCTGAATGGGCTTACGCCTTGGTTGGTTCTATAGGATCAATCGTTTGCGGGACTCTTAGTGCCTTCTTTGCCTATGTTCTTAGTGCCGTCCTTAGCGTATACTACAATCAAGACCACGCTTACATGATAAGAGAGATTGGGAAATATTGCTACCTATTGATCGGCGTTTCATCCGCGGCTCTTATTTTCAACACGTTACAACATTTCTTTTGGGACGTTGTGGGAGAGAACTTGACGAAAAGGGTGAGAGAGAAAATGCTAGCGGCGGTGTTGAAAAACGAGATCGCTTGGTTCGATCAAGAGGAGAACGAGAGCTCAAGAGTTGCAGCTAGGTTAGCCGTTGATGCCAATAATGTTAGGTCTGCTATTGGGGACCGGATCTCGGTAATAGTGCAGAACTCGGCGCTCATGCTTGTGGCTTGCACTGCCGGTTTTGTTTTGCAGTGGCGGTTAGCCCTTGTCCTCATTGCCGTCTTCCCAGTGGTTGTTGCTGCCACTGTTTTGCAGAAAATGTTCATGCAAGGATTTTCAGGGGACCTAGAAGCTGCACACGCCAAAGCAACACAACTAGCTGGAGAAGCTGTAGCCAATGTAAGAACCGTTGCGGCCTTCAATTCCGAAACCAAAATAGTTGGCCTCTTCACTTCCAACCTCCAAACACCACTTCGCCGCTGCTTTTGGAAAGGACAAATAGCGGGAAGTGGATATGGAATAGCCCAGTTTTTGCTTTATGCTTCTTATGCTCTCGGCCTTTGGTACGCCTCTTGGCTCGTAAAGCATGGTATCTCTGACTTCTCAAAGACCATTCGGGTTTTCATGGTCCTTATGGTCTCGGCCAATGGTGCAGCCGAGACACTGACATTAGCCCCAGACTTCATCAAGGGTGGTCAAGCCATGCGGTCCGTTTTTGAGCTGCTTGACCGCAAAACTGAAATTGAACCCGATGATCAAGATGCTACCCCAGTCCCAGACCGCCTTCGTGGAGAAGTGGAACTAAAGCATGTTGACTTCTCTTACCCCTCCCGTCCCGATACTTTAGTTTTCCGGGACTTGACCCTTCGTGCTCGAGCCAGCAAGACTCTAGCACTCGTTGGCCCCAGTGGGTGTGGTAAGAGCTCAGTCATTGCACTTATACAAAGATTTTATGAGCCATCTTCGGGCCGTGTGGTTATCGATGGGAAGGACATAAGAAAGTACAACCTCAAGTCATTGAGACGCCACATTGCTGTTGTCCCACAAGAGCCTTGCCTCTTTGCTACGACCATTTATGAGAATATTGCTTACGGGCATGAGTCGGTAACCGAAACCGAGATAATCGAAGCAGCAACACTTGCAAATGCCCACAAGTTTATTTCATCATTACCTGATGGATACAAAACATTTGTAGGCGAAAGAGGAGTTCAATTAAGCGGAGGACAAAAACAAAGGATCGCCTTAGCTCGGGCTTTTATAAGGAAGGCCGAGATAATGCTTCTTGATGAAGCCACGAGTGCGCTTGATGCCGAGTCAGAGACGTGTGTACAAGAAGCTCTCGAGCGGGCTTGCTCCGGTAAGACCACCATTGTGGTGGCTCACCGGCTATCAACAATAAGAAATGCAAGTGTCATTGCAGTTATAGATGATGGGAAAGTGGCGGAACAAGGGTCTCACTCGCATTTATTGAAAAACTACCCAGACGGGTGTTATGCACGTATGATACAGTTACAACGGTTCTCGCACGGCCAAGCTGTGACTATGGCGTCCGGTTCAAGTTCATCGGCGTGA

Network for GWHGAAZE013208

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	100	363	2.40E-49
PF00005.28	ABC_tran	433	528	5.20E-20
PF00664.24	ABC_membrane	727	993	6.80E-53
PF00005.28	ABC_tran	1065	1213	1.60E-33

Protein Sequence

>GWHPAAZE013215
MSQNSQEIKITEQWKWSEMQGLELLEREKERTQDLFVERELGTTESENGGGERKKEMEVVSEEKKDGGNGREEKPNSLSPPSGFLELFRFADKLDYFLMGIGTIGAFVHGSSLPLFLRFFADLVNSFGSNANDIDKMTHEVLKYAFYFLIVGAAIWASSWAGERQSTKMRIKYLESALNQDIQYFDTEVRTSDVVFAINTEAVLVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPLIAVIGGIHTATLSNLSSKSQESLSQAGNIAEQTILQIRTVFAFVGESRALQAYSSALRVAQKLGYKSGFSKGLGLGATYFTVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMLGGIALGQSAPSMAAFAKARVAAAKIFRIIDHKPSVDRNSESGLELDSVSGQLELRNVEFSYPSRPDVQILNNFSLSVPSGKTIALVGSSGSGKSTVVSLIERFYDPASGQVLLDGHDIKALKLRWLRQQIGLVSQEPALFATTIKENILLGRPEATLDEIEEAAQVANAHSFIIKLPDGYDTQNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFAKGDSGIYAKLIRMQEVAHETALNNARKSSARPSSARNSVSSPIITRNSSYGRSPYSRRLSDFSTSDFSLSMDATYPNYRHEKLPFKEQASSFWRLAKMNSPEWAYALVGSIGSIVCGTLSAFFAYVLSAVLSVYYNQDHAYMIREIGKYCYLLIGVSSAALIFNTLQHFFWDVVGENLTKRVREKMLAAVLKNEIAWFDQEENESSRVAARLAVDANNVRSAIGDRISVIVQNSALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMQGFSGDLEAAHAKATQLAGEAVANVRTVAAFNSETKIVGLFTSNLQTPLRRCFWKGQIAGSGYGIAQFLLYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGQAMRSVFELLDRKTEIEPDDQDATPVPDRLRGEVELKHVDFSYPSRPDTLVFRDLTLRARASKTLALVGPSGCGKSSVIALIQRFYEPSSGRVVIDGKDIRKYNLKSLRRHIAVVPQEPCLFATTIYENIAYGHESVTETEIIEAATLANAHKFISSLPDGYKTFVGERGVQLSGGQKQRIALARAFIRKAEIMLLDEATSALDAESETCVQEALERACSGKTTIVVAHRLSTIRNASVIAVIDDGKVAEQGSHSHLLKNYPDGCYARMIQLQRFSHGQAVTMASGSSSSA

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05658	ABCB1, CD243	ABC transporters	map02010
K05658	ABCB1, CD243	Bile secretion	map04976

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity
GO:0016887	molecular_function	ATPase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	62.808
	SRR3591706	second leaf	29.450
	SRR3591707	mature leaf	15.788
	SRR3591708	Shoot apex	33.883
	SRR3591709	Stem	24.130
	SRR3591710	White floral bud	18.688
	SRR3591711	White flower	14.550
	SRR3591712	Green floral bud	28.967
	SRR3591713	Yellow flower	4.670
SRP173429	SRR8316895	Juvenile bud stage	12.535
	SRR8316896	Juvenile bud stage	13.910
	SRR8316897	Juvenile bud stage	8.562
	SRR8316894	Third green stage	7.947
	SRR8316900	Third green stage	21.486
	SRR8316901	Third green stage	19.237
	SRR8316898	Complete white stage	10.874
	SRR8316899	Complete white stage	46.864
	SRR8316903	Complete white stage	17.823
	SRR8316902	Silver flowering stage	5.901
	SRR8316904	Silver flowering stage	10.197
	SRR8316905	Silver flowering stage	2.553
	SRR8316906	Gold flowering stage	14.491
	SRR8316907	Gold flowering stage	6.697
	SRR8316908	Gold flowering stage	8.614
SRP132670	SRR6706286	Control	24.281
	SRR6706287	Light intensity 50%	22.061
	SRR6706288	Light intensity 20%	23.811
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.316
	CNS0095593	Slightly white alabastrum(diploid) 2	12.258
	CNS0095594	Slightly white alabastrum(diploid) 3	6.405
	CNS0095595	Whole white alabastrum(diploid) 2	9.802
	CNS0095596	Whole white alabastrum(diploid) 3	5.032
	CNS0095597	Whole white alabastrum(diploid) 4	7.925
	CNS0095598	Silvery flower (diploied) 1	11.942
	CNS0095599	Silvery flower (diploied) 2	11.852
	CNS0095600	Silvery flower (diploied) 3	13.988
	CNS0095601	Golden flower (diploid) 1	9.600
	CNS0095602	Golden flower (diploid) 2	10.943
	CNS0095603	Golden flower (diploid) 3	10.683
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.661
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.305
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.023
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.905
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.351
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.257
	CNS0095610	Silvery flower (tetraploid) 1	6.600
	CNS0095611	Silvery flower (tetraploid) 2	7.092
	CNS0095612	Silvery flower (tetraploid) 3	3.927
	CNS0095613	Golden flower (tetraploid) 1	2.002
	CNS0095614	Golden flower (tetraploid) 2	5.098
	CNS0095615	Golden flower (tetraploid) 3	2.239
CRA001975	CRR073297	Stem 1	31.955
	CRR073298	Stem 2	33.135
	CRR073299	Stem 3	28.487
	CRR073300	Leaf 1	45.063
	CRR073301	Leaf 2	47.525
	CRR073302	Leaf 3	32.053
	CRR073303	Juvenile bud 1	44.567
	CRR073304	Juvenile bud 2	32.494
	CRR073305	Juvenile bud 3	72.351
	CRR073306	Third green 1	11.266
	CRR073307	Third green 2	8.034
	CRR073308	Third green 3	12.198
	CRR073309	Second white 1	3.501
	CRR073310	Second white 2	2.082
	CRR073311	Second white 3	0.854
	CRR073312	Silver flowering 1	1.257
	CRR073313	Silver flowering 2	2.083
	CRR073314	Silver flowering 3	1.262
	CRR073315	Gold flowering 1	23.234
	CRR073316	Gold flowering 2	35.045
	CRR073317	Gold flowering 3	30.850
	CRR073318	Tawny withering 1	35.849
	CRR073319	Tawny withering 2	20.555
	CRR073320	Tawny withering 3	31.290