Detail information of GWHGAAZE013198


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009334653.10PREDICTED: cell division control protein 48 homolog D [Pyrus x bretschneideri]
Swissprottr|P54774|CDC48_SOYBN0Cell division cycle protein 48 homolog
trEMBLtr|D7TQP5|D7TQP5_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI32765.3}
TAIR10AT3G53230.10ATPase, AAA-type, CDC48 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9843284798440763-
GWHAAZE00000003mRNA9843284798440763-
GWHAAZE00000003exon9843284798433143-
GWHAAZE00000003exon9843397198434330-
GWHAAZE00000003exon9843534098435621-
GWHAAZE00000003exon9843612798436198-
GWHAAZE00000003exon9843642898436649-
GWHAAZE00000003exon9843716698437932-
GWHAAZE00000003exon9843859398438821-
GWHAAZE00000003exon9844058498440763-
GWHAAZE00000003CDS9844058498440763-
GWHAAZE00000003CDS9843859398438821-
GWHAAZE00000003CDS9843716698437932-
GWHAAZE00000003CDS9843642898436649-
GWHAAZE00000003CDS9843612798436198-
GWHAAZE00000003CDS9843534098435621-
GWHAAZE00000003CDS9843397198434330-
GWHAAZE00000003CDS9843284798433143-
Transcript Sequence

Network for GWHGAAZE013198

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0041
CFinderModule0293map04141 Protein processing in endoplasmic reticulum
GO:0016787 hydrolase activity GOslim:molecular_function
map04137 Mitophagy - animal
map04146 Peroxisome


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02359.19CDC48_N251063.40E-23
PF02933.18CDC48_21271904.00E-11
PF00004.30AAA2403692.30E-47
PF17862.2AAA_lid_33924346.20E-15
PF00004.30AAA5136461.80E-46
PF17862.2AAA_lid_36687082.20E-13
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13525VCP, CDC48 Protein processing in endoplasmic reticulum map04141

Gene Ontology

GO term OntologyName
GO:0016787molecular_functionhydrolase activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf185.575
SRR3591706second leaf88.978
SRR3591707mature leaf65.014
SRR3591708Shoot apex120.898
SRR3591709Stem149.605
SRR3591710White floral bud252.152
SRR3591711White flower301.466
SRR3591712Green floral bud174.858
SRR3591713Yellow flower202.531
SRP173429 SRR8316895Juvenile bud stage 110.919
SRR8316896Juvenile bud stage 156.462
SRR8316897Juvenile bud stage 69.055
SRR8316894Third green stage 66.415
SRR8316900Third green stage 216.513
SRR8316901Third green stage 201.783
SRR8316898Complete white stage 134.968
SRR8316899Complete white stage 269.905
SRR8316903Complete white stage 225.758
SRR8316902Silver flowering stage135.358
SRR8316904Silver flowering stage175.567
SRR8316905Silver flowering stage87.141
SRR8316906Gold flowering stage 339.590
SRR8316907Gold flowering stage 326.221
SRR8316908Gold flowering stage 331.192
SRP132670SRR6706286Control203.842
SRR6706287Light intensity 50%209.659
SRR6706288Light intensity 20%224.421
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1117.358
CNS0095593Slightly white alabastrum(diploid) 2144.686
CNS0095594Slightly white alabastrum(diploid) 3109.747
CNS0095595Whole white alabastrum(diploid) 2123.747
CNS0095596Whole white alabastrum(diploid) 3109.849
CNS0095597Whole white alabastrum(diploid) 4112.602
CNS0095598Silvery flower (diploied) 1132.516
CNS0095599Silvery flower (diploied) 2135.494
CNS0095600Silvery flower (diploied) 3362.302
CNS0095601Golden flower (diploid) 1121.631
CNS0095602Golden flower (diploid) 2273.984
CNS0095603Golden flower (diploid) 3259.994
CNS0095604Slightly white alabastrum(tetraploid) 1116.624
CNS0095605Slightly white alabastrum(tetraploid) 297.317
CNS0095606Slightly white alabastrum(tetraploid) 3228.149
CNS0095607Whole white alabastrum(tetraploid) 174.408
CNS0095608Whole white alabastrum(tetraploid) 272.879
CNS0095609Whole white alabastrum(tetraploid) 3187.117
CNS0095610Silvery flower (tetraploid) 1380.429
CNS0095611Silvery flower (tetraploid) 2346.321
CNS0095612Silvery flower (tetraploid) 3297.556
CNS0095613Golden flower (tetraploid) 1212.304
CNS0095614Golden flower (tetraploid) 2298.602
CNS0095615Golden flower (tetraploid) 3337.185
CRA001975CRR073297Stem 1209.118
CRR073298Stem 2198.615
CRR073299Stem 3245.203
CRR073300Leaf 1282.956
CRR073301Leaf 2257.032
CRR073302Leaf 3257.758
CRR073303Juvenile bud 1355.285
CRR073304Juvenile bud 2312.534
CRR073305Juvenile bud 3412.565
CRR073306Third green 1362.640
CRR073307Third green 2297.799
CRR073308Third green 3316.252
CRR073309Second white 1369.777
CRR073310Second white 2315.648
CRR073311Second white 3281.214
CRR073312Silver flowering 1229.618
CRR073313Silver flowering 2270.086
CRR073314Silver flowering 3232.773
CRR073315Gold flowering 1135.197
CRR073316Gold flowering 2179.392
CRR073317Gold flowering 3167.794
CRR073318Tawny withering 1211.172
CRR073319Tawny withering 2171.671
CRR073320Tawny withering 3183.493