Gene detail

Detail information of GWHGAAZE013193

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008243964.1	0	PREDICTED: probable receptor-like protein kinase At5g47070 isoform X1 [Prunus mume]
Swissprot	tr\|Q9LFP7\|Y5158_ARATH	9E-118	Probable receptor-like protein kinase At5g15080
trEMBL	tr\|M5VZ55\|M5VZ55_PRUPE	0	Uncharacterized protein {ECO:0000313\|EMBL:EMJ06391.1}
TAIR10	AT3G09830.2	7E-142	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98368635	98372289	+
GWHAAZE00000003	mRNA	98368635	98372289	+
GWHAAZE00000003	exon	98368635	98368991	+
GWHAAZE00000003	exon	98370006	98370266	+
GWHAAZE00000003	exon	98371162	98371284	+
GWHAAZE00000003	exon	98371933	98372289	+
GWHAAZE00000003	CDS	98368635	98368991	+
GWHAAZE00000003	CDS	98370006	98370266	+
GWHAAZE00000003	CDS	98371162	98371284	+
GWHAAZE00000003	CDS	98371933	98372289	+

Transcript Sequence
>GWHTAAZE013207 ATGAAGTGTTTCCCATTCTCAATTAGAGAGAAGAGTGAACCAAAAACCACCAAGTCAATTTCATTTACCAATAATGAAATGACCGTAAGCGAGCCTGAATTCAGCTCTGAAAATGTCTCGAATACTAGCACAGAGACCGTGGGTCGGACCGCCCCTCGAAGTTTATCTCAGAGGCCGAACAATCTCAGAGCTTTCACATTTTCTGAGCTGAAGGTAGCAACAAAGAATTTCAGTCCCTCCACCAAGCTTGGAGAAGGCGGGTTTGGGTGTGTCCATAAGGGTGTGATCAAGGGTTCTGAGGATCCAGCACAAAAACTTGATGTTGCTGTGAAACAACTTAGTCGAAGAGGATCACAGGGGCACAAGGAATGGGTGACGGAAGTTAATGTGCTTGGTGTACTTGAGCATCCGAACCTTGTCAAACTAGTGGGATACTGTGCCGAAGATGATGAAAGAGGAATCCAACGGCTACTAATTTATGAATATATGCCTAATCGAAGCGTCGATGATCATTTATCAAATCGGTCATATACCCCTCTCTCATGGGCCATGAGATTGAAAGTTGCACAAGATGCTGCTCGTGGGTTAGCATATCTACACGAGGAAATGGACTTTCAGATCATTTTCAGAGATTTCAAATCTTCAAACATTCTTCTTGATGAGCAGTGGAATGCCAAGCTATCGGACTTTGGATTGGCTAGATTGGGCCCTACAGAAGGACTATCCCATGTCTCAACCGCGGTTGTAGGAACTTTGGGATACGCGTCACCTGAATACGTTCAGACGGGCCATCTCACCTCCAAAAACGATGTATGGAGCTACGGCGTGTTCCTCTACGAGCTTATCTCGGGTAGGCGCCCGTATGATCGGAACCGCCCCAAGTACGAGCAAAAGCTTTTGGTATGGATAAAACCGTACCTAGACTCGAAGAAGTTTAGGGTTATAGTAGACCCGAGACTTGAAGGCAATTATCCGCTTGACTCGGCCCAAAAGCTATCGGCTGTAGCCAACCGGTGCTTGGCTAGACGTCCAAAGACTCGGCCGAAGATGAGTGAAGTGTTGGAAATGGTGAATCAAGTTGTGGCCGAATCGATGTAA

Network for GWHGAAZE013193

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	81	355	4.00E-48

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	11.574
	SRR3591706	second leaf	5.951
	SRR3591707	mature leaf	15.131
	SRR3591708	Shoot apex	13.472
	SRR3591709	Stem	13.872
	SRR3591710	White floral bud	30.584
	SRR3591711	White flower	35.348
	SRR3591712	Green floral bud	14.451
	SRR3591713	Yellow flower	40.220
SRP173429	SRR8316895	Juvenile bud stage	12.127
	SRR8316896	Juvenile bud stage	14.377
	SRR8316897	Juvenile bud stage	10.308
	SRR8316894	Third green stage	5.125
	SRR8316900	Third green stage	9.365
	SRR8316901	Third green stage	10.332
	SRR8316898	Complete white stage	12.329
	SRR8316899	Complete white stage	21.200
	SRR8316903	Complete white stage	16.843
	SRR8316902	Silver flowering stage	21.764
	SRR8316904	Silver flowering stage	24.923
	SRR8316905	Silver flowering stage	14.327
	SRR8316906	Gold flowering stage	68.423
	SRR8316907	Gold flowering stage	53.142
	SRR8316908	Gold flowering stage	62.075
SRP132670	SRR6706286	Control	13.633
	SRR6706287	Light intensity 50%	14.209
	SRR6706288	Light intensity 20%	13.089
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.323
	CNS0095593	Slightly white alabastrum(diploid) 2	14.177
	CNS0095594	Slightly white alabastrum(diploid) 3	15.890
	CNS0095595	Whole white alabastrum(diploid) 2	12.414
	CNS0095596	Whole white alabastrum(diploid) 3	4.110
	CNS0095597	Whole white alabastrum(diploid) 4	9.104
	CNS0095598	Silvery flower (diploied) 1	27.621
	CNS0095599	Silvery flower (diploied) 2	25.851
	CNS0095600	Silvery flower (diploied) 3	30.400
	CNS0095601	Golden flower (diploid) 1	33.414
	CNS0095602	Golden flower (diploid) 2	38.622
	CNS0095603	Golden flower (diploid) 3	41.379
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.417
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.709
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.075
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.717
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.590
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.753
	CNS0095610	Silvery flower (tetraploid) 1	27.773
	CNS0095611	Silvery flower (tetraploid) 2	30.141
	CNS0095612	Silvery flower (tetraploid) 3	48.318
	CNS0095613	Golden flower (tetraploid) 1	28.701
	CNS0095614	Golden flower (tetraploid) 2	35.676
	CNS0095615	Golden flower (tetraploid) 3	59.806
CRA001975	CRR073297	Stem 1	11.278
	CRR073298	Stem 2	15.469
	CRR073299	Stem 3	9.521
	CRR073300	Leaf 1	10.120
	CRR073301	Leaf 2	10.423
	CRR073302	Leaf 3	8.609
	CRR073303	Juvenile bud 1	6.300
	CRR073304	Juvenile bud 2	7.602
	CRR073305	Juvenile bud 3	5.176
	CRR073306	Third green 1	22.105
	CRR073307	Third green 2	17.762
	CRR073308	Third green 3	19.738
	CRR073309	Second white 1	30.152
	CRR073310	Second white 2	44.586
	CRR073311	Second white 3	34.716
	CRR073312	Silver flowering 1	26.482
	CRR073313	Silver flowering 2	21.995
	CRR073314	Silver flowering 3	19.133
	CRR073315	Gold flowering 1	9.913
	CRR073316	Gold flowering 2	10.988
	CRR073317	Gold flowering 3	10.474
	CRR073318	Tawny withering 1	21.195
	CRR073319	Tawny withering 2	25.708
	CRR073320	Tawny withering 3	12.545