Gene detail

Detail information of GWHGAAZE013192

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010653588.1	2.23612E-76	PREDICTED: uncharacterized protein LOC100263609 [Vitis vinifera]
Swissprot	tr\|Q9C7B1\|TRP3_ARATH	9E-10	Telomere repeat-binding protein 3
trEMBL	tr\|D7TQN4\|D7TQN4_VITVI	8E-77	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI32754.3}
TAIR10	AT2G37025.2	3E-30	TRF-like 8

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98352762	98359980	-
GWHAAZE00000003	mRNA	98352762	98359980	-
GWHAAZE00000003	exon	98359620	98359980	-
GWHAAZE00000003	exon	98358526	98358693	-
GWHAAZE00000003	exon	98357870	98357955	-
GWHAAZE00000003	exon	98357616	98357667	-
GWHAAZE00000003	exon	98356622	98356709	-
GWHAAZE00000003	exon	98356075	98356539	-
GWHAAZE00000003	exon	98355870	98355964	-
GWHAAZE00000003	exon	98355436	98355663	-
GWHAAZE00000003	exon	98353895	98353951	-
GWHAAZE00000003	exon	98352762	98352917	-
GWHAAZE00000003	five_prime_UTR	98359920	98359980	-
GWHAAZE00000003	CDS	98359620	98359919	-
GWHAAZE00000003	CDS	98358526	98358693	-
GWHAAZE00000003	CDS	98357870	98357955	-
GWHAAZE00000003	CDS	98357616	98357667	-
GWHAAZE00000003	CDS	98356622	98356709	-
GWHAAZE00000003	CDS	98356075	98356539	-
GWHAAZE00000003	CDS	98355870	98355964	-
GWHAAZE00000003	CDS	98355436	98355663	-
GWHAAZE00000003	CDS	98353895	98353951	-
GWHAAZE00000003	CDS	98352762	98352917	-

Transcript Sequence
>GWHTAAZE013206 GCTAAGTTGAGGCGATAATTTTGGTGGCATTTTGGAACTGTGGCTATAGTTTAGGGTTCATATGCGTAGTTATGTAGAGCATTGTCGTATTGATGTCAAAGTTCAGAATTATGTTCCTTTACTGGTTTCCATTAGATTAGCATGGTTAGATTGTAGTGGATTCTATTTGTTGTTTGATTTATCGTTTTTGCTTCTTCATGCACGCACTGATTCAATTACGGTGGGTGTCCGTTCTCCCTTATTTTTTTTTTCCGGTAACTATATACCAAGAAAACCCACCCCAAATCCTCGCTCGGTGAGACCCAAATCTAGGATTTCTCCTGGGTCTGAGTGGACGGCTCTCCAACTCCCTTGCTTTAAGGAAGAAGAATATTTTATTCCTTCAGAAGAGGCAAACGAAGTTGAGTGTCTACTTGTGGAACATCAAAATGATCATGTCGCAGTGGATAAAATCTTGTGTTCTCCTGATGATAAGATACAGCAGTGCATGGAAATAGAAGATGCTACCTATAGGTTTGGTATGGCCCAAATAGCTAGAGGAGACTCGAAGAGGGATGTACAATTGGCCCATTTGTGTTGCAATCCATACTACACCAACGTTGCTGCACTTCTTTGGTGGGCCTGCGACCAATGCTACCAGGGAAGGGAAGATATATCAAACGTCAAACTACTTGATACAACGCCACTACAAGTAGAAGGTGGAAATTGTCAAGCAGAAAATGGTGGCTCTACTACATGTGAAGATTACCTTCTAGATAATGGATTGGATTGTGATGCCAGTGAAAGATTGCATTTTGGGAACTCGGATTTAGAAAATCAGATTATGGGTTTTAATTGCTGTGATAATGTTCCAATTGGAATATCAGATTCATCAACAACAATTATTTCAGTTCCACACTGCCAAAATACTTTAATTGACAAGGCCATTTGTGAATTAAATGCCAATTTTAGCAACAAACATGATGCCGAAACGTCAATCGAGAGCAACTGGTTGAACTACCGTTATTCTGAATCTCAAAACGTTGAGAAATTGGAGGATGTTTTAGATCTCTCAGTAACAAAGGTCTCTTCTGATGAAAATGAAATGATTGTAGAAACTGAAAGCCTCCATAAGCAGGATCTGCTAGCGAAGAACTCTGCCCAAAATTGCAATTCTAGTGCTATTTTTAGACAGAAGAGATTGCGTAAGCCTACACGGAGGTACATGGATGAATCATCAGTGCCATCAGCTGATGAATCCTTTTGTAATGCTATTCAAGTGCCATTTAGTCCTCGAGGGCGGAAAGAATGTCAGAAGAAGCATGTGTCTACTGTGATGCAAACTTACGTTGAGTCTTCTCCTCCAGCTAAGTCGGAAGATAAATCTATGGCAGTGGTAAGATCCGAAGTGAATGGTGGTCTGAGGAAGCACCATAAGCTATGGACCCTTTCGGAGGTGAGAAATTTGATTGATGGTGTGTCTCAATTTGGGGTTGGAAAATGGACCCAAATAAAAAAGCTCCTCTTCTCATCGTCTCCTCATCGCACACCTGTAGATCTCAAGGACAAGTGGCGAAATCTTCTAAAAGCAAGCAGTGCACAGAAACAGAATAAGAGAGAGGATGAGCAGAAAAGGAGCCGGCCGTGGCGTCCCTTGCCAAAGTCTGTGCTACGCCGTGTCAACGAACTGGCTGCCATTTATCCATACCCGAGAGGCCGTAACTTCAAGCTTAATTCGCATGTTAATACTGTCTCCTCTCCCGCTTATCGGGCCTGA

Network for GWHGAAZE013192

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	454	501	7.10E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.511
	SRR3591706	second leaf	5.494
	SRR3591707	mature leaf	6.802
	SRR3591708	Shoot apex	9.981
	SRR3591709	Stem	8.851
	SRR3591710	White floral bud	7.144
	SRR3591711	White flower	6.043
	SRR3591712	Green floral bud	8.609
	SRR3591713	Yellow flower	3.206
SRP173429	SRR8316895	Juvenile bud stage	5.680
	SRR8316896	Juvenile bud stage	7.548
	SRR8316897	Juvenile bud stage	3.624
	SRR8316894	Third green stage	3.431
	SRR8316900	Third green stage	8.963
	SRR8316901	Third green stage	7.271
	SRR8316898	Complete white stage	2.668
	SRR8316899	Complete white stage	8.774
	SRR8316903	Complete white stage	5.593
	SRR8316902	Silver flowering stage	2.642
	SRR8316904	Silver flowering stage	4.337
	SRR8316905	Silver flowering stage	2.133
	SRR8316906	Gold flowering stage	5.915
	SRR8316907	Gold flowering stage	4.494
	SRR8316908	Gold flowering stage	5.402
SRP132670	SRR6706286	Control	3.243
	SRR6706287	Light intensity 50%	3.454
	SRR6706288	Light intensity 20%	3.921
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.540
	CNS0095593	Slightly white alabastrum(diploid) 2	5.573
	CNS0095594	Slightly white alabastrum(diploid) 3	7.091
	CNS0095595	Whole white alabastrum(diploid) 2	6.332
	CNS0095596	Whole white alabastrum(diploid) 3	6.856
	CNS0095597	Whole white alabastrum(diploid) 4	7.450
	CNS0095598	Silvery flower (diploied) 1	7.847
	CNS0095599	Silvery flower (diploied) 2	5.150
	CNS0095600	Silvery flower (diploied) 3	6.203
	CNS0095601	Golden flower (diploid) 1	8.918
	CNS0095602	Golden flower (diploid) 2	5.164
	CNS0095603	Golden flower (diploid) 3	5.185
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.112
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.912
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.689
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.343
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.913
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.478
	CNS0095610	Silvery flower (tetraploid) 1	4.873
	CNS0095611	Silvery flower (tetraploid) 2	5.850
	CNS0095612	Silvery flower (tetraploid) 3	4.558
	CNS0095613	Golden flower (tetraploid) 1	3.083
	CNS0095614	Golden flower (tetraploid) 2	3.248
	CNS0095615	Golden flower (tetraploid) 3	1.686
CRA001975	CRR073297	Stem 1	6.448
	CRR073298	Stem 2	5.801
	CRR073299	Stem 3	4.651
	CRR073300	Leaf 1	5.429
	CRR073301	Leaf 2	5.685
	CRR073302	Leaf 3	3.183
	CRR073303	Juvenile bud 1	3.059
	CRR073304	Juvenile bud 2	2.885
	CRR073305	Juvenile bud 3	4.120
	CRR073306	Third green 1	1.170
	CRR073307	Third green 2	1.203
	CRR073308	Third green 3	1.844
	CRR073309	Second white 1	1.730
	CRR073310	Second white 2	3.180
	CRR073311	Second white 3	1.214
	CRR073312	Silver flowering 1	0.868
	CRR073313	Silver flowering 2	0.369
	CRR073314	Silver flowering 3	0.479
	CRR073315	Gold flowering 1	1.626
	CRR073316	Gold flowering 2	3.602
	CRR073317	Gold flowering 3	1.365
	CRR073318	Tawny withering 1	3.905
	CRR073319	Tawny withering 2	3.541
	CRR073320	Tawny withering 3	3.576