Gene detail

Detail information of GWHGAAZE013186

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_007027344.1	Cyclic nucleotide-gated channel 15 isoform 1 [Theobroma cacao]
Swissprot	tr\|Q9SL29\|CNG15_ARATH	Putative cyclic nucleotide-gated ion channel 15
trEMBL	tr\|A0A061ESN5\|A0A061ESN5_THECC	Cyclic nucleotide-gated channel 15 isoform 1 {ECO:0000313\|EMBL:EOY07846.1}
TAIR10	AT2G28260.1	cyclic nucleotide-gated channel 15

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98234972	98243029	-
GWHAAZE00000003	mRNA	98234972	98243029	-
GWHAAZE00000003	exon	98234972	98235682	-
GWHAAZE00000003	exon	98236177	98236311	-
GWHAAZE00000003	exon	98236607	98236718	-
GWHAAZE00000003	exon	98236853	98237304	-
GWHAAZE00000003	exon	98238009	98238538	-
GWHAAZE00000003	exon	98240090	98240226	-
GWHAAZE00000003	exon	98240364	98240475	-
GWHAAZE00000003	exon	98240536	98240842	-
GWHAAZE00000003	exon	98242771	98242814	-
GWHAAZE00000003	exon	98242963	98243029	-
GWHAAZE00000003	CDS	98242963	98243029	-
GWHAAZE00000003	CDS	98242771	98242814	-
GWHAAZE00000003	CDS	98240536	98240842	-
GWHAAZE00000003	CDS	98240364	98240475	-
GWHAAZE00000003	CDS	98240090	98240226	-
GWHAAZE00000003	CDS	98238009	98238538	-
GWHAAZE00000003	CDS	98236853	98237304	-
GWHAAZE00000003	CDS	98236607	98236718	-
GWHAAZE00000003	CDS	98236177	98236311	-
GWHAAZE00000003	CDS	98234972	98235682	-

Transcript Sequence
>GWHTAAZE013200 ATGACAGCGGAGGCAATGAGTTGGATTTCGGCATCGGTGGCCAGGGACGTGGACGCTTCATCGAGTTTAAATGCGATTTGTGGAGATTTTACTGGTAAAAAGATAAATAAGAAGTTGTGTGAGGATTTTGTTGTTGTGCATCCTGATAGTGTTGATTCGGTTATCAAATGGGCACATCTGATGGTGGCCAGCAGTGGTTCGATGAATCTTGCTCGAGATTTTTTGAGTAAGGTTGCTACAGTGTGTTGGGCAACATGGAAGGCTAGGAATGCCGTCTTCATTTTTGTGCATATTGATAGTTTCAGTAGAAAAGTGGCTTGGTTGGCCAAGAAGTGGTTTGAAGAATTTAAAGGTGCTTTGGCTTTGCCTTCTTCCGATATTATTGATGCCTCAGCTCCGCCTCAGTTTCCTTTTACTGAGGTTGCTGCTGTTGGATGCGTGCTTTTCAGTCCTCAAGCTCGGTTGGTTGATGGTTTTGGTTCCAGGGTGGTTACTTCTTCAGCCACGTTGGCTGTCATAGGGGCTTGTAGGATTAGAGTTGAAAGTGGGTTTTCGTCCTTAGAAGCTCCAATATTGAGTGGTGCTGGTGGCCAAGACTGTTTCTTTGGGGTTTCTTCCCCGCCTCTAGAGTTTTCTGTTTTGTTGCCTCCTTTGTTTGTTTTCTTCGATTCCAAGTTGATCTTGAAACTCCAAACTCTAATCCGGCCACGACCCAAAAGAAGAAATATGTTCAAGCTCACCTCTCTGATAAATGGCAAACAAATGCCCAAATCATGCTTACCCAAGAACTTTCAAGAGAAAAAATTATCTCGAGTTTTCTCTGAAGACTATGAGGTGGTGCAAAGAAAGATACTGGATCCTCGAGGGGGCCCCTTAAACCAATGGAATAAATGCTTCTTAGTAGCTTGTTTAGTTTCCCTTTTCGTGGACCCTTTGTTCTTTTACTTGCCCCAAGTTAAAGAAAAGGTTTGCATGGACGCAAGCGTTCTCCTCGAGATCAGCCTTACAGCGATCCGATCCATTGTTGATGCGTTTTATATGGTTCAAATTTTTGTGAGATTTCGTACAGCTTATGTGGCACCTTCATCTCGTGTGTTTGGGAGGGGAGAACTTGTTATTGACTCTAAAAAGATTGCTTCGAGGTATCTAAGGAAAGATTTTTGGTTTGACCTTTTGGCTGCTCTGCCCCTTCCTCAGGCCACTGGACTTGTGGTTGAAGCAGCCTGGGCCGGTGCAGCTTATAATCTCATGCTTTTCATGTTGGCAAGCCATGTAACTCTCTCTCTCTCTCTCTCTCTCTTGCACGGGCACGCTTTATTTCCTACTCACTTAAATAATTCACTAATTGTTGTGAAGGTTATTGGTTCGTGCTGGTACCTACTCGCAATTGAGCGACAAGAACAGTGTTGGAAGGACGTTTGCAATCTCCAACGTCCTACTTGCCAACATGTGTTTTTCAAATGCTCTAGTGTTAATGTTTCCGGTAGAGCAGTCTGGTTTGAATCAAGCAATATCACTACTCTTTGTGGTCCCGATGGCGGATTCTATCAGTTTGGCATTTATGCGGATGCTTTAACTTTTGGTGTTACATCCACAAATTTCTTCAACAAGTACTCTTATTGTCTTTGGTGGGGCCTTAGGAACTTGAGTTCAGTAGGGCAGAACTTGTTTACAAGCACCTACATTGGAGAGATAAATTTTTCCATTATAATCTCAATTGTTGGGTTGTTGCTATTCGCATTGCTTATTGGGAATATGCAAACGTATCTCCAATCTACAACTGTTAGACTAGAAGAGTGGAGGGTTAAAAGGACCGATACTGAACAATGGATGCATCACCGGCAATTGCCTCATGAATTGAGGGAGAGCGTGCGTAGATATGATCTTTATAAATGGGTCCCACTATTCGACCAAATGGACGAACGTACCCTCGACGCAATATGCGAAAGGCTAAAGCCTGTTCTGTGCACCCCAAACACTTGCCTAGCCCGAGAGGGTGACCCGGTCAACGAAATGCTCTTCATAATCAGAGGTTACCTTGAGTCCTACACCACCGGTGGGGGCCGAACTGGCTTCTTAAACTCTTGTCGGATCGGGGCCGGGGACTTTTGTGGCGAGGAGCTCTTGGACTGGGCCCTGGACCCTCGACCAATCACCATCCTCCCTTGGTCCACGCGTACTGTGACAGCCATTAGCCAGGTGGAGGCCTTTGCCCTCAATTCCGAGGATGTTAAGTTCGTTGCATCTCAGTTCCGGAAGCTTCATAGCAAGCAAATAAGGCACACATTTAGGTTCTACTCGCACCAATGGCGGACTTGGGCCGCATGCTTTATACAAGCAGCTTGGTTAAGGTATAAGAGAAGGAGAGAGGCAGCTAAACTTAAGGCCAAGGAGGGGCAAATGGTGGGTTTGAGCGAGCCGGTTGAGAGGCAGACTAGCGTGCAATTGTCACCAATGGTGTCCGAGTTGGCATTTTATGCCGCGACTTTGGCTGCAAGTGCTAGAAAAGGGAGCAAAAGGGCTGCAGTGTCTGAATTTGATCTTATGAGTTCATTGCAAAAGCCTTTCGACCCTGATTTTGAAGTTCGTGATAGGTTTAAGCAATAA

Network for GWHGAAZE013186

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00520.32	Ion_trans	295	596	3.80E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05391	CNGC	Plant-pathogen interaction	map04626

Gene Ontology

GO term	Ontology	Name
GO:0006811	biological_process	ion transport
GO:0055085	biological_process	transmembrane transport
GO:0016020	cellular_component	membrane
GO:0005216	molecular_function	ion channel activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.954
	SRR3591706	second leaf	0.754
	SRR3591707	mature leaf	9.062
	SRR3591708	Shoot apex	0.612
	SRR3591709	Stem	3.833
	SRR3591710	White floral bud	0.344
	SRR3591711	White flower	3.401
	SRR3591712	Green floral bud	0.406
	SRR3591713	Yellow flower	0.312
SRP173429	SRR8316895	Juvenile bud stage	0.136
	SRR8316896	Juvenile bud stage	0.638
	SRR8316897	Juvenile bud stage	0.260
	SRR8316894	Third green stage	0.106
	SRR8316900	Third green stage	0.274
	SRR8316901	Third green stage	0.427
	SRR8316898	Complete white stage	0.465
	SRR8316899	Complete white stage	0.471
	SRR8316903	Complete white stage	0.476
	SRR8316902	Silver flowering stage	0.908
	SRR8316904	Silver flowering stage	0.966
	SRR8316905	Silver flowering stage	0.668
	SRR8316906	Gold flowering stage	2.559
	SRR8316907	Gold flowering stage	3.441
	SRR8316908	Gold flowering stage	2.104
SRP132670	SRR6706286	Control	0.182
	SRR6706287	Light intensity 50%	0.034
	SRR6706288	Light intensity 20%	0.050
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.034
	CNS0095593	Slightly white alabastrum(diploid) 2	0.530
	CNS0095594	Slightly white alabastrum(diploid) 3	0.335
	CNS0095595	Whole white alabastrum(diploid) 2	0.104
	CNS0095596	Whole white alabastrum(diploid) 3	0.041
	CNS0095597	Whole white alabastrum(diploid) 4	0.075
	CNS0095598	Silvery flower (diploied) 1	3.910
	CNS0095599	Silvery flower (diploied) 2	4.366
	CNS0095600	Silvery flower (diploied) 3	1.937
	CNS0095601	Golden flower (diploid) 1	0.777
	CNS0095602	Golden flower (diploid) 2	1.583
	CNS0095603	Golden flower (diploid) 3	1.455
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.316
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.654
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.362
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.229
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.129
	CNS0095610	Silvery flower (tetraploid) 1	1.837
	CNS0095611	Silvery flower (tetraploid) 2	0.499
	CNS0095612	Silvery flower (tetraploid) 3	0.948
	CNS0095613	Golden flower (tetraploid) 1	4.328
	CNS0095614	Golden flower (tetraploid) 2	1.207
	CNS0095615	Golden flower (tetraploid) 3	1.899
CRA001975	CRR073297	Stem 1	0.027
	CRR073298	Stem 2	0.060
	CRR073299	Stem 3	0.129
	CRR073300	Leaf 1	0.037
	CRR073301	Leaf 2	0.105
	CRR073302	Leaf 3	0.097
	CRR073303	Juvenile bud 1	0.021
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.067
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.066
	CRR073309	Second white 1	0.010
	CRR073310	Second white 2	0.038
	CRR073311	Second white 3	0.044
	CRR073312	Silver flowering 1	0.015
	CRR073313	Silver flowering 2	0.041
	CRR073314	Silver flowering 3	0.024
	CRR073315	Gold flowering 1	0.104
	CRR073316	Gold flowering 2	0.406
	CRR073317	Gold flowering 3	1.676
	CRR073318	Tawny withering 1	0.789
	CRR073319	Tawny withering 2	3.315
	CRR073320	Tawny withering 3	0.532