Gene detail

Detail information of GWHGAAZE013183

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002274407.1	2.5633E-110	PREDICTED: 60S ribosomal protein L12 [Vitis vinifera]
Swissprot	tr\|O50003\|RL12_PRUAR	3E-109	60S ribosomal protein L12
trEMBL	tr\|A5C9G0\|A5C9G0_VITVI	1E-110	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN75443.1}
TAIR10	AT2G37190.1	3E-83	Ribosomal protein L11 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98132864	98134100	-
GWHAAZE00000003	mRNA	98132864	98134100	-
GWHAAZE00000003	exon	98132864	98133151	-
GWHAAZE00000003	exon	98133888	98134100	-
GWHAAZE00000003	CDS	98133888	98134100	-
GWHAAZE00000003	CDS	98132864	98133151	-

Transcript Sequence
>GWHTAAZE013197 ATGCCGCCGAAGTTCGATCCATCACAAGTCGTCGACGTGTACGTCCGCGTCACCGGAGGCGAGGTTGGAGCGGCGAGTTCCCTCGCTCCGAAAATCGGTCCACTCGGTCTATCACCAAAGAAGATCGGTGAGGACATAGCGAAAGAGACCGCCAAGGACTGGAAGGGCCTTAGAGTCACTGTTAAGCTCACCGTCCAGAACCGTCAAGCCAAGGTTGCTGTGGTTCCCTCTGCTGCTGCTCTGGTCATCAAGGCATTGAAGGAGCCGGAGAGAGACCGGAAAAAGACAAAGAACATCAAGCACACCGGCAACATTTCGCTTGATGATGTAATCGAGATTGCGAAGATCATGAGGCCGAGATCTATGGCCAAGGAACTCGCAGGAACTGTGAAGGAGATCCTCGGGACATGTGTATCCGTAGGTTGTACTGTTGATGGTAAGGACCCTAAGGACTTGCAGCAGGAGATTGCTGATGGTGATGTTGAAGTCCCCGAGGATTGA

Network for GWHGAAZE013183

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03946.15	Ribosomal_L11_N	10	70	3.40E-20
PF00298.20	Ribosomal_L11	75	144	4.70E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02870	RP-L12e, RPL12	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	555.298
	SRR3591706	second leaf	246.433
	SRR3591707	mature leaf	90.632
	SRR3591708	Shoot apex	690.480
	SRR3591709	Stem	240.622
	SRR3591710	White floral bud	178.059
	SRR3591711	White flower	204.337
	SRR3591712	Green floral bud	417.280
	SRR3591713	Yellow flower	153.681
SRP173429	SRR8316895	Juvenile bud stage	213.657
	SRR8316896	Juvenile bud stage	265.209
	SRR8316897	Juvenile bud stage	152.853
	SRR8316894	Third green stage	125.053
	SRR8316900	Third green stage	452.717
	SRR8316901	Third green stage	424.188
	SRR8316898	Complete white stage	75.638
	SRR8316899	Complete white stage	383.328
	SRR8316903	Complete white stage	103.309
	SRR8316902	Silver flowering stage	62.856
	SRR8316904	Silver flowering stage	59.345
	SRR8316905	Silver flowering stage	30.689
	SRR8316906	Gold flowering stage	112.904
	SRR8316907	Gold flowering stage	122.042
	SRR8316908	Gold flowering stage	146.375
SRP132670	SRR6706286	Control	421.629
	SRR6706287	Light intensity 50%	411.937
	SRR6706288	Light intensity 20%	457.154
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	340.163
	CNS0095593	Slightly white alabastrum(diploid) 2	419.115
	CNS0095594	Slightly white alabastrum(diploid) 3	304.923
	CNS0095595	Whole white alabastrum(diploid) 2	314.509
	CNS0095596	Whole white alabastrum(diploid) 3	404.334
	CNS0095597	Whole white alabastrum(diploid) 4	268.205
	CNS0095598	Silvery flower (diploied) 1	173.528
	CNS0095599	Silvery flower (diploied) 2	179.316
	CNS0095600	Silvery flower (diploied) 3	152.118
	CNS0095601	Golden flower (diploid) 1	149.879
	CNS0095602	Golden flower (diploid) 2	139.949
	CNS0095603	Golden flower (diploid) 3	140.595
	CNS0095604	Slightly white alabastrum(tetraploid) 1	341.022
	CNS0095605	Slightly white alabastrum(tetraploid) 2	347.275
	CNS0095606	Slightly white alabastrum(tetraploid) 3	448.606
	CNS0095607	Whole white alabastrum(tetraploid) 1	197.005
	CNS0095608	Whole white alabastrum(tetraploid) 2	194.652
	CNS0095609	Whole white alabastrum(tetraploid) 3	361.088
	CNS0095610	Silvery flower (tetraploid) 1	121.622
	CNS0095611	Silvery flower (tetraploid) 2	111.552
	CNS0095612	Silvery flower (tetraploid) 3	69.401
	CNS0095613	Golden flower (tetraploid) 1	53.537
	CNS0095614	Golden flower (tetraploid) 2	103.698
	CNS0095615	Golden flower (tetraploid) 3	50.834
CRA001975	CRR073297	Stem 1	442.950
	CRR073298	Stem 2	476.670
	CRR073299	Stem 3	584.404
	CRR073300	Leaf 1	555.992
	CRR073301	Leaf 2	573.976
	CRR073302	Leaf 3	770.195
	CRR073303	Juvenile bud 1	616.423
	CRR073304	Juvenile bud 2	492.270
	CRR073305	Juvenile bud 3	509.070
	CRR073306	Third green 1	70.003
	CRR073307	Third green 2	83.314
	CRR073308	Third green 3	85.151
	CRR073309	Second white 1	102.447
	CRR073310	Second white 2	64.165
	CRR073311	Second white 3	38.155
	CRR073312	Silver flowering 1	73.872
	CRR073313	Silver flowering 2	116.791
	CRR073314	Silver flowering 3	78.616
	CRR073315	Gold flowering 1	197.917
	CRR073316	Gold flowering 2	227.080
	CRR073317	Gold flowering 3	240.480
	CRR073318	Tawny withering 1	496.979
	CRR073319	Tawny withering 2	373.678
	CRR073320	Tawny withering 3	478.866