Gene detail

Detail information of GWHGAAZE013181

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011094671.1	PREDICTED: serine/threonine-protein kinase-like protein CCR1 [Sesamum indicum]
Swissprot	tr\|Q9S7D9\|ACCR1_ARATH	Serine/threonine-protein kinase-like protein CCR1 (Precursor)
trEMBL	tr\|F6HR21\|F6HR21_VITVI	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB57070.1}
TAIR10	AT3G09780.1	CRINKLY4 related 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98088737	98090944	-
GWHAAZE00000003	mRNA	98088737	98090944	-
GWHAAZE00000003	exon	98088737	98090944	-
GWHAAZE00000003	CDS	98088737	98090944	-

Transcript Sequence
>GWHTAAZE013195 ATGGGGCCTATTTCAGCCGCATTTGGGGAAAATGGATTCTTTTGTGCCATTGATGCCAGTGGAAAACAAGAAGTACTCTGTTGGGGGAAAAACAATAGCTCATCCATATCACCAAATCACTTAGTTGGTTCCACCACTGTTCCTCCAATGGCAGCACTTGTGGGTGGGTATGGATTTATGTGTGGCATTTTATCGAACACCTCACAGGCGTATTGTTGGAATGCTACTGGTTTTAGCTCAGATCTTGTCCCTCCCATCTTTAAAACCACCTCTTATTCGCATATATCCGCTGGTAAGAATCATGTATGTGCTATAAGAGGTTCTTACTATTTGGATAATGATTTGGGTACCATTGATTGTTGGGACATTGTTCTTAGTTCAGATAATTCTTTAAGCTCAAAACAGAGTACTCTGTTTTATGATCAGTTAATTAGTACACTTGTATTTAGAACAGTTGTTTCTGGTCATGGGTTTAGTTGTGGTAGTGTTAGGGAAGGTGGTGTTGTATGCTGGGGACCAAATTCAGCTAATTTAGGGATTTTTGGTGTATCTGAAAATTTTGTGAGCTTGTCTTCAAGTATAAATTCTCTATGTGGGGTTTTAGAATTATCTAGTGAAGTTAAATGTTGGGGTGATAAGAATTCATCTCTTAATCCTCCAAATGGAATTGGGTTTGTTTCAATGGCAGCTGGATTAAATCATTATTGCGGGATTCGAGAAGATAATCATGGGATTGAGTGCTGGGGAACGTTTAATTCGTCTTCAATCCCAAAGGATTCTGGGTTCTACGCAATCGCTTCAACTGATTTCACTACATGCGGTATTAGGGAAGATGACATGGTTCTTGATTGTTGGTTTGCTAATGTATCATCTCCATCCGATTATGATCCACCGTTGCAGCTTTGCAGTCCCGGTTTATGCACCTCTAGATCTTGTGTTGACGGGAAATTCACTTTCAATGCAAGCCTTCTCCACGAGCCAGATTTGAGTACCTTATGCGTTCGTAAAGATCTAAAAATTTGTTCCCCTTGCGGCTTAAATTGCTCCCAAGGATTCTTTGCTTCGAGCTTGTGTACAGATAATGCAGATAGAGTGTGCACCGCTTGCTCTCTTTGCCAAAACAGCTCGTGTTCCGATGTTTGCAGGCTTCAAGTGGTGCAGGGTAAGCAACCCCACCAACCTAGTAGTAGATTAGTACTCATTCTTGGATCTTCTGTATTGGGTTTCTTGTTGATACTAATGGGTTGGTGTCTTTTACCCCGTTTGGTTATGACGAAAAACAAAGGGAAAAAGAAACAATTTACATTGTGTATAGGTAATTCAGAGGTGGAAAATGAAACAATAACTGACCAAAATCCTCCCTTGTCTATAGCACCGTTCCCTGGTGTCGCTCAAGTTTTTCGACTGTCTGAACTAAAGGATGCTACTAATGGGTTCAAAGAGTTCAATGAGCTTGGTAGGGGTAGCTATGGGTTTGTTTACAAAGCCGTGCTCACCGATGGTCTACAAGTTGTGGTAAAGAGAGCTAATGCTGCTACAATAATCCACACGAATAATCGGGAATTTGAAATGGAGCTAGAGGTCCTTTGCAATGCGAGGCATAGCAATATTGTGAACTTGTTGGGTTACTGCACAGAAATGGGGGAAAGGTTGCTAGTTTACGAGTATATGCACCATGGGACTCTTTATGATCATCTGCATGGGGGGCTTCTTCCTCTAAATTGGACTCTAAGGTTAAAGATTTCAATGCAGGCTGCAAGAGGCCTGTCGTACCTTCACAAAGAAGTTGTACCTCCAATTGTTCATCGGGACATTAAGAGTTCAAATATCCTTTTGGATTTTGATTGGGGAGCCCGAATTGCAGATTTCGGGCTTCTTACTCCAAATGAAATAGATGTTGATGTAGACATGAAAGGTGATGTTTATGGCTTTGGGATTGTACTTTTAGAAATTCTTAGTGGAAAAAAAGCTTATGATAGAGATTTATTTCCTCCTAATTTAGTTGACCGGGCGGTGCCCCTTATCAAACAGGGCAAGGGGGCCGCTATTCTTGATCAATATGTGGCTCTACCAAGAAATGTTGAGCCTTTGCTTAAACTTGCCGATATAGCAGAGCTAGCAGTGAGGGAAAATACGAATGAGCGGCCTAATATGGTTGATGTGGCATTTTTGTTGGAGCAACTTGTGAAGGATGGATTGATATTGTAG

Network for GWHGAAZE013181

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	483	627	5.20E-30

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_CR4L

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.101
	SRR3591706	second leaf	0.767
	SRR3591707	mature leaf	0.311
	SRR3591708	Shoot apex	3.652
	SRR3591709	Stem	0.798
	SRR3591710	White floral bud	0.889
	SRR3591711	White flower	2.218
	SRR3591712	Green floral bud	0.945
	SRR3591713	Yellow flower	0.285
SRP173429	SRR8316895	Juvenile bud stage	0.983
	SRR8316896	Juvenile bud stage	0.499
	SRR8316897	Juvenile bud stage	0.358
	SRR8316894	Third green stage	0.360
	SRR8316900	Third green stage	0.450
	SRR8316901	Third green stage	0.333
	SRR8316898	Complete white stage	0.054
	SRR8316899	Complete white stage	0.343
	SRR8316903	Complete white stage	0.138
	SRR8316902	Silver flowering stage	0.166
	SRR8316904	Silver flowering stage	0.040
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.095
	SRR8316907	Gold flowering stage	0.215
	SRR8316908	Gold flowering stage	0.064
SRP132670	SRR6706286	Control	0.320
	SRR6706287	Light intensity 50%	0.483
	SRR6706288	Light intensity 20%	0.659
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.086
	CNS0095593	Slightly white alabastrum(diploid) 2	0.728
	CNS0095594	Slightly white alabastrum(diploid) 3	1.003
	CNS0095595	Whole white alabastrum(diploid) 2	0.566
	CNS0095596	Whole white alabastrum(diploid) 3	0.277
	CNS0095597	Whole white alabastrum(diploid) 4	0.331
	CNS0095598	Silvery flower (diploied) 1	1.117
	CNS0095599	Silvery flower (diploied) 2	0.851
	CNS0095600	Silvery flower (diploied) 3	0.611
	CNS0095601	Golden flower (diploid) 1	1.091
	CNS0095602	Golden flower (diploid) 2	0.798
	CNS0095603	Golden flower (diploid) 3	1.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.488
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.630
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.481
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.554
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.076
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.604
	CNS0095610	Silvery flower (tetraploid) 1	0.178
	CNS0095611	Silvery flower (tetraploid) 2	0.257
	CNS0095612	Silvery flower (tetraploid) 3	0.237
	CNS0095613	Golden flower (tetraploid) 1	0.092
	CNS0095614	Golden flower (tetraploid) 2	0.071
	CNS0095615	Golden flower (tetraploid) 3	0.021
CRA001975	CRR073297	Stem 1	1.503
	CRR073298	Stem 2	1.614
	CRR073299	Stem 3	1.432
	CRR073300	Leaf 1	0.664
	CRR073301	Leaf 2	0.689
	CRR073302	Leaf 3	0.069
	CRR073303	Juvenile bud 1	0.333
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.448
	CRR073306	Third green 1	0.054
	CRR073307	Third green 2	0.036
	CRR073308	Third green 3	0.051
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.023
	CRR073311	Second white 3	0.043
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.002
	CRR073314	Silver flowering 3	0.057
	CRR073315	Gold flowering 1	0.290
	CRR073316	Gold flowering 2	0.520
	CRR073317	Gold flowering 3	0.310
	CRR073318	Tawny withering 1	0.270
	CRR073319	Tawny withering 2	0.401
	CRR073320	Tawny withering 3	0.110