Gene detail

Detail information of GWHGAAZE013180

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009630871.1	1.01301E-91	PREDICTED: putative serine/threonine-protein kinase {ECO:0000250\|UniProtKB:Q9FE20, ECO:0000303\|Ref.2} isoform X1 [Nicotiana tomentosiformis]
Swissprot	tr\|P85193\|PK01_HELAN	6E-55	Putative serine/threonine-protein kinase {ECO:0000250\|UniProtKB:Q9FE20, ECO:0000303\|Ref.2} (Fragment)
trEMBL	tr\|M1BVL6\|M1BVL6_SOLTU	7E-90	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400053890}
TAIR10	AT1G16670.1	2E-49	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	98083889	98087104	+
GWHAAZE00000003	mRNA	98083889	98087104	+
GWHAAZE00000003	exon	98083889	98083961	+
GWHAAZE00000003	exon	98084069	98084184	+
GWHAAZE00000003	exon	98084708	98084924	+
GWHAAZE00000003	exon	98085394	98085518	+
GWHAAZE00000003	exon	98086003	98086043	+
GWHAAZE00000003	exon	98086628	98086745	+
GWHAAZE00000003	exon	98086823	98087104	+
GWHAAZE00000003	CDS	98083889	98083961	+
GWHAAZE00000003	CDS	98084069	98084184	+
GWHAAZE00000003	CDS	98084708	98084924	+
GWHAAZE00000003	CDS	98085394	98085518	+
GWHAAZE00000003	CDS	98086003	98086043	+
GWHAAZE00000003	CDS	98086628	98086745	+
GWHAAZE00000003	CDS	98086823	98087104	+

Transcript Sequence
>GWHTAAZE013194 ATGAAGATTTCTTTTCCTTTCTCCATTTGTTTCTGCTCTACATCAGATACTTCTATCAATGAAGCAGGGCAAGGAGAAAACTCTGTTCAAACTTTCAGAGTATTCACTTACAACGAGCTCAAAGCTGCTAGTAATAGTTTCCATTCAAAGAACAAGATTGGAGAGGGAGGATTTGGTTCTGTTTATAAGGGTCGGCTTCGAGATGGTACAACAGTGGCCATAAAAGTGCTTTCCATTGAAATTGATTCAATGAGAGGAGAGAGAGAATTCATTTCCGAGCTAGCCGCATTGTCAGATATCAAACACGAGAATCTTGTCACTCTTAGAGGATGTTGTGTCGACGGAGCTAAAAGATTTTTAGTATATGATCACATGGAAAACAATAGCCTTGCGCACACATTTCTTGTCAGCGGACATTTGACGCGAAAATCAGATGTTTATAGCTATGGAGTATTGGTATTGGAAATTATTAGCGGGCGGTCCGTTGTGGATTTCCATTTAGAACATGGAGAGCAATTCCTAGTTGATAAGATGGCATCTCATCGCTATGCATTTAGCGTTGAAACTCCTTCCTTTGGACTGGAACATCACAATGTAGCACTTCAGGAGTACTGCCACTTGTACTCTGGGAGTACTGCTACGTGGTACTCCAGAAGTACTAATTTGGTATTCCAAGAGTACTGCTACATGGCATGGGAAATGTACAACGCAAACAACCTTATCAAGCTAGTGGACCCTGTTTTAGACGGAGATATTTCAAGAGAAGAAGCAGTTAGGTTCTTGAAGGTTGGCCTTCTTTGCGTGCAAGAGACCACTAAGCTCCGCCCTCGCATGTCAACGGCAATTAAGTTGTTGGCTAACGAAATGGATGTCGAGAAGTTCAACATTTTACAACCCGGGTTTGTGGCTGATCTTATGGATGTTAAAATAGGCCACAAGCCTTCTTCAAAAAACACCTTTTCCCCCGTATGA

Network for GWHGAAZE013180

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	49	132	1.70E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.747
	SRR3591706	second leaf	2.189
	SRR3591707	mature leaf	1.552
	SRR3591708	Shoot apex	5.615
	SRR3591709	Stem	4.884
	SRR3591710	White floral bud	1.379
	SRR3591711	White flower	2.270
	SRR3591712	Green floral bud	2.588
	SRR3591713	Yellow flower	0.868
SRP173429	SRR8316895	Juvenile bud stage	2.495
	SRR8316896	Juvenile bud stage	3.402
	SRR8316897	Juvenile bud stage	1.382
	SRR8316894	Third green stage	1.982
	SRR8316900	Third green stage	4.028
	SRR8316901	Third green stage	4.050
	SRR8316898	Complete white stage	1.064
	SRR8316899	Complete white stage	3.965
	SRR8316903	Complete white stage	1.944
	SRR8316902	Silver flowering stage	1.603
	SRR8316904	Silver flowering stage	2.287
	SRR8316905	Silver flowering stage	1.115
	SRR8316906	Gold flowering stage	4.478
	SRR8316907	Gold flowering stage	3.289
	SRR8316908	Gold flowering stage	3.328
SRP132670	SRR6706286	Control	2.310
	SRR6706287	Light intensity 50%	1.986
	SRR6706288	Light intensity 20%	2.377
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.526
	CNS0095593	Slightly white alabastrum(diploid) 2	2.894
	CNS0095594	Slightly white alabastrum(diploid) 3	4.417
	CNS0095595	Whole white alabastrum(diploid) 2	3.938
	CNS0095596	Whole white alabastrum(diploid) 3	4.679
	CNS0095597	Whole white alabastrum(diploid) 4	3.876
	CNS0095598	Silvery flower (diploied) 1	3.909
	CNS0095599	Silvery flower (diploied) 2	2.936
	CNS0095600	Silvery flower (diploied) 3	3.506
	CNS0095601	Golden flower (diploid) 1	4.805
	CNS0095602	Golden flower (diploid) 2	4.072
	CNS0095603	Golden flower (diploid) 3	3.002
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.966
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.381
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.475
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.303
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.141
	CNS0095609	Whole white alabastrum(tetraploid) 3	9.106
	CNS0095610	Silvery flower (tetraploid) 1	2.142
	CNS0095611	Silvery flower (tetraploid) 2	2.523
	CNS0095612	Silvery flower (tetraploid) 3	2.765
	CNS0095613	Golden flower (tetraploid) 1	1.972
	CNS0095614	Golden flower (tetraploid) 2	2.418
	CNS0095615	Golden flower (tetraploid) 3	1.608
CRA001975	CRR073297	Stem 1	2.521
	CRR073298	Stem 2	1.283
	CRR073299	Stem 3	1.324
	CRR073300	Leaf 1	1.844
	CRR073301	Leaf 2	2.859
	CRR073302	Leaf 3	1.636
	CRR073303	Juvenile bud 1	1.828
	CRR073304	Juvenile bud 2	1.207
	CRR073305	Juvenile bud 3	0.738
	CRR073306	Third green 1	2.309
	CRR073307	Third green 2	1.115
	CRR073308	Third green 3	2.585
	CRR073309	Second white 1	5.346
	CRR073310	Second white 2	5.175
	CRR073311	Second white 3	5.684
	CRR073312	Silver flowering 1	2.811
	CRR073313	Silver flowering 2	1.932
	CRR073314	Silver flowering 3	1.703
	CRR073315	Gold flowering 1	1.077
	CRR073316	Gold flowering 2	0.483
	CRR073317	Gold flowering 3	0.391
	CRR073318	Tawny withering 1	1.324
	CRR073319	Tawny withering 2	2.071
	CRR073320	Tawny withering 3	1.021