Detail information of GWHGAAZE013166


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrNP_001274976.11.38415E-97uncharacterized protein LOC102577739 [Solanum tuberosum]
Swissprottr|P46297|RS23_FRAAN1E-9840S ribosomal protein S23
trEMBLtr|V4RTD8|V4RTD8_9ROSI5E-98Uncharacterized protein {ECO:0000313|EMBL:ESR37898.1}
TAIR10AT5G02960.12E-74Ribosomal protein S12/S23 family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9793581997938396-
GWHAAZE00000003mRNA9793581997938396-
GWHAAZE00000003exon9793839297938396-
GWHAAZE00000003exon9793635597936510-
GWHAAZE00000003exon9793613797936263-
GWHAAZE00000003exon9793581997935959-
GWHAAZE00000003CDS9793839297938396-
GWHAAZE00000003CDS9793635597936510-
GWHAAZE00000003CDS9793613797936263-
GWHAAZE00000003CDS9793581997935959-
Transcript Sequence

Network for GWHGAAZE013166

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00164.26Ribosom_S12_S23311416.80E-50
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02973RP-S23e, RPS23 Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf370.732
SRR3591706second leaf223.318
SRR3591707mature leaf80.130
SRR3591708Shoot apex470.315
SRR3591709Stem192.842
SRR3591710White floral bud151.941
SRR3591711White flower195.770
SRR3591712Green floral bud306.395
SRR3591713Yellow flower138.211
SRP173429 SRR8316895Juvenile bud stage 162.397
SRR8316896Juvenile bud stage 253.036
SRR8316897Juvenile bud stage 153.293
SRR8316894Third green stage 104.025
SRR8316900Third green stage 298.809
SRR8316901Third green stage 285.484
SRR8316898Complete white stage 38.409
SRR8316899Complete white stage 192.128
SRR8316903Complete white stage 75.076
SRR8316902Silver flowering stage48.394
SRR8316904Silver flowering stage54.476
SRR8316905Silver flowering stage28.942
SRR8316906Gold flowering stage 82.813
SRR8316907Gold flowering stage 85.947
SRR8316908Gold flowering stage 123.226
SRP132670SRR6706286Control277.926
SRR6706287Light intensity 50%288.340
SRR6706288Light intensity 20%320.730
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1355.910
CNS0095593Slightly white alabastrum(diploid) 2410.255
CNS0095594Slightly white alabastrum(diploid) 3339.585
CNS0095595Whole white alabastrum(diploid) 2289.478
CNS0095596Whole white alabastrum(diploid) 3317.241
CNS0095597Whole white alabastrum(diploid) 4225.937
CNS0095598Silvery flower (diploied) 1139.015
CNS0095599Silvery flower (diploied) 2139.051
CNS0095600Silvery flower (diploied) 3102.991
CNS0095601Golden flower (diploid) 1112.309
CNS0095602Golden flower (diploid) 295.045
CNS0095603Golden flower (diploid) 394.567
CNS0095604Slightly white alabastrum(tetraploid) 1291.867
CNS0095605Slightly white alabastrum(tetraploid) 2305.109
CNS0095606Slightly white alabastrum(tetraploid) 3343.983
CNS0095607Whole white alabastrum(tetraploid) 1171.491
CNS0095608Whole white alabastrum(tetraploid) 2150.305
CNS0095609Whole white alabastrum(tetraploid) 3242.699
CNS0095610Silvery flower (tetraploid) 1112.554
CNS0095611Silvery flower (tetraploid) 286.397
CNS0095612Silvery flower (tetraploid) 360.490
CNS0095613Golden flower (tetraploid) 176.631
CNS0095614Golden flower (tetraploid) 288.695
CNS0095615Golden flower (tetraploid) 342.384
CRA001975CRR073297Stem 1276.392
CRR073298Stem 2263.741
CRR073299Stem 3268.624
CRR073300Leaf 1239.502
CRR073301Leaf 2286.485
CRR073302Leaf 3338.326
CRR073303Juvenile bud 1256.811
CRR073304Juvenile bud 2208.402
CRR073305Juvenile bud 3201.120
CRR073306Third green 125.530
CRR073307Third green 237.743
CRR073308Third green 343.294
CRR073309Second white 146.945
CRR073310Second white 236.818
CRR073311Second white 327.415
CRR073312Silver flowering 137.358
CRR073313Silver flowering 245.880
CRR073314Silver flowering 337.914
CRR073315Gold flowering 1117.462
CRR073316Gold flowering 2102.648
CRR073317Gold flowering 394.446
CRR073318Tawny withering 1232.213
CRR073319Tawny withering 2247.781
CRR073320Tawny withering 3251.004