Gene detail

Detail information of GWHGAAZE013163

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010653449.1	PREDICTED: E3 ubiquitin-protein ligase UPL4 isoform X1 [Vitis vinifera]
Swissprot	tr\|Q9LYZ7\|UPL4_ARATH	E3 ubiquitin-protein ligase UPL4
trEMBL	tr\|M5W7B6\|M5W7B6_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ09594.1}
TAIR10	AT5G02880.1	ubiquitin-protein ligase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97893681	97905732	+
GWHAAZE00000003	mRNA	97893681	97905732	+
GWHAAZE00000003	exon	97893681	97894340	+
GWHAAZE00000003	exon	97894746	97894856	+
GWHAAZE00000003	exon	97894961	97895077	+
GWHAAZE00000003	exon	97895174	97895332	+
GWHAAZE00000003	exon	97895832	97895993	+
GWHAAZE00000003	exon	97898485	97898637	+
GWHAAZE00000003	exon	97898728	97898849	+
GWHAAZE00000003	exon	97899220	97900303	+
GWHAAZE00000003	exon	97900618	97900713	+
GWHAAZE00000003	exon	97900826	97902058	+
GWHAAZE00000003	exon	97902968	97903198	+
GWHAAZE00000003	exon	97903302	97903406	+
GWHAAZE00000003	exon	97904510	97904590	+
GWHAAZE00000003	exon	97904667	97904735	+
GWHAAZE00000003	exon	97904816	97904980	+
GWHAAZE00000003	exon	97905472	97905555	+
GWHAAZE00000003	exon	97905667	97905732	+
GWHAAZE00000003	CDS	97893681	97894340	+
GWHAAZE00000003	CDS	97894746	97894856	+
GWHAAZE00000003	CDS	97894961	97895077	+
GWHAAZE00000003	CDS	97895174	97895332	+
GWHAAZE00000003	CDS	97895832	97895993	+
GWHAAZE00000003	CDS	97898485	97898637	+
GWHAAZE00000003	CDS	97898728	97898849	+
GWHAAZE00000003	CDS	97899220	97900303	+
GWHAAZE00000003	CDS	97900618	97900713	+
GWHAAZE00000003	CDS	97900826	97902058	+
GWHAAZE00000003	CDS	97902968	97903198	+
GWHAAZE00000003	CDS	97903302	97903406	+
GWHAAZE00000003	CDS	97904510	97904590	+
GWHAAZE00000003	CDS	97904667	97904735	+
GWHAAZE00000003	CDS	97904816	97904980	+
GWHAAZE00000003	CDS	97905472	97905555	+
GWHAAZE00000003	CDS	97905667	97905732	+

Transcript Sequence
>GWHTAAZE013177 ATGTATACAGGACTGATGGGGAATCGAGGTCAAAAAAGAGCAGAAACAGCTGATGAATTGCCTGCAGATAAGCGAGCATGCAGTTCATTGGAGTACAGACCAAGTTCATCGAACTCATCAGTACAAACCCCAATAAATTCCACAAATTCGGGGCATGAACCCCAAGACGGTGACATGGACACATCGTCTTCAACTTCCGGGTCAACCCGGTCAGAGGGAGAAGGGGAAAAGGATTCTTCTGCATATGGGTCTTGTGATTCTGATGGAATGGGTGATGGAGAGCTTAGGCAGCACAGCCTCCGTGAATATCAAAGGCGGCGATCATCTAGTGATCATGGGAAATTCAAGAAAGTTTTATCGAGTTTGAGTGAAGAAGTTGAACAGTCTGGTCAATTTGCTGCTCTCACTGAGCTATGTGAATTGTTATCGTTTTGTACAGATAGTTCATTGTCTAGCGTGATGGCGGACTCGTTTGCTCCAATTATTGTAAGACTGGCAAGACATGAGAGCAATCCGGATATAATGCTTTTAGCTGTCAGGGCTATAACTTATCTATGTGATGTCCATCCTCGATCCTCGGGTTTTCTTGTTAGACACGACGCGGTTCCCGCACTTTGTCAAAGATTAATGGCCATTGAGTACTTGGATGTAGCTGAACAATGTTTGCAAGCGCTAGAGAAAATCTCACGTGAACAACCACATGTATGTCTACAATCAGGGGCAATCATGGCTGTTCTTAATTATATCGATTTCTTCTCAACAAGTGTGCAGAGGGTTGCATTATCCACTGTGGTAAACATATGTAAGACACTTCCTCCTGAATGTCCACCATCTCTCATGGAGGCAGTTCCAATATTATGTAATCTTTTGCAGTACGAGGATAGGCAGCTGGTTGAAAATGTAGCTACATGCTTAATAAATATAGCGGAGCGAGTACACCACTCATCTGATAGGGTGGATGAACTTTGTAAACACGGATTGATTCATCAAGCCACACATCTCATAGATTTGAATAGTCGGACAACATTGTGCCAACCTGTTTACACCGGCTTGATAGGGCTGCTTGCGAAACTTGCTTCTGGTTCTACTGTTGCTCTCACAACACTTTTTGAGCTTAATATAAGCAGCATATTGAAAGATATTTTGTCTAATTACGACCTCTTGCATGGAATGCCTTCTTCCCCAGTGGCAGACGGGCATTGCAATCAGGTGCATGAAGTTTTAAAGTTGCTGAACGAGCTACTACCCCCAATAGCCAGAGACCAAGATATTAAATCAGGCTCGGACAAGGAAGCTTTTCTGATGAATCGACCCGATCTTCTGCAAATGTTTGGGATGGACTTACTTCCAGTGTTGATCCAGGTGGTTAATTCTGGTGTAAATTTATATGTTTGTTATGGCTGTCTATCTGTTATCAACAAGTTAGTTTATTTCAGCAAATCTGACATGCTTCTTGAATTGCTTAAGAGTACCAACATTTCAAGTTTCTTGGCTGGAGTTTTTACTCGTAAGGATCAGCATGTGCTCGTATTAGCGCTTCAAATAGTTGATACTATCCTTCAAAAGCATTCGGACATTTTCCTGAGCTCATTTGTAAAAGAAGGCGTTTTCTTCGCTGTTGATGCACTTCTTATGCCAGAAACGTGTTCGCAGTCTATGTTTCCTATGTTTAATAATCTCCAGTTGTCAAATGATCCACAAAAGTCTACTGTGAGAGATCTCCCAAGGTGCTTATGTTATGCCTTTGATATTTCAACATCAGGAAGTTGCACGTTGGAAAAAGATTCGGTTCACAATCTTGCAGAGCGCATTAAAGCTAATTACTTCACTACAGAATTACTTAACAGTGAGAAAGGGTTGACTGATATTCTTCAAAAGCTTAAAACATTATCTACCGCATTAACAGAGTTGGTGAAGATTACCACAAGCGATGATACTCTTTCTCAGCACGAAGAGGAATTTGATGGCATATTGCATCAAATTATGTCAGAGATAAGTGGACGAGATCCCATCTCAACTTTTGAATTTGTTGAGAGTGGGATTGTTAAATCGTTAGTTAATTACCTATCCAACGGCCAATGTTTTGGAGGAGATGGAGGTAGTACTGGTGAATTTGGTCGATCTTACATTGTAGAAAAGAGATTTGAGGTGTTTGGAAAATTATTTTCATCATCTTCTGATTTGCTTTTTGAGGACTTCTCCATGTTAGCATTGATTCGGAAACTACAAAGTGCTTTATCTTCTGTTGAAAACTTCCCGGTTATATTGGGCAATGCGTCAAAGCAAAAGAACTCGTATGCGACGGTTCCATATGGGCGCTGTACAACACATCCGTCTTTGAAAGTTCAGTTTTTGAGGGGAGAGGGAGAAACGTCTTTTAGTGATTATTATGAAGATGTTGTGACGGTTGATCCTTTTTCATCTTTGGATGCAATTGAAACGTACTTGTGGCCTAAAGTTAGTGCAAAAAGAATTAAATGTGTAAAATCGGAATCAAGCTCTCCTCAATGCAGAAGCCCAGATCTAAAGGAAGCCGATAGCACTTCCATTGATATACATGAGATGCAGGAGGACAAGGCTAACTTTTCACAATTTAAACTTCGAGAAGAACCTGGTTTAGTACAGAAAGCTGGTGAATCTGCAGGCTCGAGTGAAGACCATACAGATCCTGTGGACCAAGAACAGCATACTCCTTCAGAGGAGGACACTAACATGCGCACAGAGTGCCCTAGATCCAGTAGCGTCGAAGTTGCTTCACCAAAATTGTCATTTTACTTAGATGGCCAAGAGTTAGACCGGAAGTTGACATTGTATCAATCTGTTCTCCAACGACAAAGTAAAGTGGAACATGAAATTGTTACTACTGCTAAACTTTGGAGCCAAGTATACAGATTGACATACAGAAAAGGAGTCAAACCTAAACAAAGTAGTTGTTCTCAACTTTGTAATCACCAGACCCATAATTCTTCTGTATTGGAAAAATCTCTATCGTATTGCAACACTCCATTTTTCCCTGGCATGTCTGCTCCTGAACTTGCTTCCGATGTGGAAAGGTCGAGTGCAACTTATTCTATATTGTTTCTGCTGAAAAGTTTGGAAGGCATTAATAGTTTCAGATTTCATCTAATGTCTCGAGAAAGAATGTATGCTTTCGCTGATGGCAAATTTGATGACTTGGATAAATTAAAGATTTTAGTTTCTAACGTGGTACAGAACGAGTTTGTGAACAGTAAATTGACTGAAAAACTAGAGCAGCAGATGCGGGACCCATTGGCCGTGTCCATTGGTGGTATGCCTTCATGGTGTAGCCAGTTAGTGAATTCATGCCCCTTCTTATTTAGTTTTGAAGCAAGAAGTAAGTACTTCAAATTGGAAGCATTAGGTCAGCCTCAAGTGCAGCCTCATTTGTCGTCTCAAAGTAATTCAAACGGACGGCTACAAAACAATGTTGCTTTGCCTCGTAAAAAGTTTTTAGTTTACCGAAATCGGATATTGGAATCAGCCACCCAGATGATGGACCTCCATGCTCGTAAAAAAGTCATTCTTGAGGTCGAATATGATGAGGAAGTTGGTACTGGACTCGGTCCCACTTTGGAATTCTATACACTGGTTGGTTATGAATTTCAGAAGTTTGGCCTTGGTTTATGGAGAGAGGACCATGCACCCTTTACCTCTACCAAAAGTTTAATTGCTGAGGATAACGGAATTAACTCGTGTCCTTTTGGGCTTTTTCCTCGCCCGTGGTCATCAGCAGTGAGTATGTCAAGTGGAATAGAGTTTGAAGGAGTGATAAAGAAGTTTTTCCTTCTGGGGCAGGTTGTTGCTAAGGCTGTTCAAGATGGAAGGGTTTTCGATCTTCCCTTCTCCATAGCTTTTTATAAAGTTATTCTTGGAAAGGATCTCACAGTTTATGACATTCAGTCATTTGATCCTGGGCTTGGTAGGGCTCTACTAGAGTTTCAGGCTCTTGTTGAAAGGAAAAAATATCTCGAATCTGTACACGGAGAAAAATCAACTTTTAAGCTCGACTCCAGCTTCCGAAATATAAGAATTGAAGATCTTTGCCTTGATTTTTCTCTTCCTGGGTATCCTGAGTACATTCTTTCCTCTGGTCCTGATTCGGAAATGGTGAACATGGGTAACTTGGGTGAATATGTTTCTCTTGTTGTGGATGCAACTGTTAATTCTGGAATTGCGAGACAAGTTGATGCTTTCAAATCAGGGTTCAATCAGGTTTTCCCAGTCGAACATCTTCAGATATTCAATGAACAGGAATTAGAGCGTTTGCTATGTGGAGAACGTGAATTGTGGAATTCAAATGACCTTTTGGATCACATCAAGTTAGATCATGGTTACACTGCGAGCAGCCCCCCGGTTGTAAATTTACTGGAAATTATACGAGAATTTGACCGCGAGCAACAAAAGGCATTTCTGCGGTTCGTGACCGGCGCACCTCGGCTCCCTCCCGGAGGTTTGGCGTCTCTCAACCCTAAATTGACGATTGTACGCAAGGTTTGTAATCTAACACACCCCAGTTTCCCATTTTTGCATTGTGGCAAATGGGTAGATGCAGACCTGCCCAGTGTGATGACTTGTGCCAATTATCTGAAGCTGCCCCCTTACTCTTCAAAAGAGAGGATGAAAGAGAAGCTCTTGTATGCGATAACAGAAGGACAAGGATCTTTCCACCTCTCATAG

Network for GWHGAAZE013163

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00632.26	HECT	1239	1565	1.80E-77

Protein Sequence

>GWHPAAZE013170
MYTGLMGNRGQKRAETADELPADKRACSSLEYRPSSSNSSVQTPINSTNSGHEPQDGDMDTSSSTSGSTRSEGEGEKDSSAYGSCDSDGMGDGELRQHSLREYQRRRSSSDHGKFKKVLSSLSEEVEQSGQFAALTELCELLSFCTDSSLSSVMADSFAPIIVRLARHESNPDIMLLAVRAITYLCDVHPRSSGFLVRHDAVPALCQRLMAIEYLDVAEQCLQALEKISREQPHVCLQSGAIMAVLNYIDFFSTSVQRVALSTVVNICKTLPPECPPSLMEAVPILCNLLQYEDRQLVENVATCLINIAERVHHSSDRVDELCKHGLIHQATHLIDLNSRTTLCQPVYTGLIGLLAKLASGSTVALTTLFELNISSILKDILSNYDLLHGMPSSPVADGHCNQVHEVLKLLNELLPPIARDQDIKSGSDKEAFLMNRPDLLQMFGMDLLPVLIQVVNSGVNLYVCYGCLSVINKLVYFSKSDMLLELLKSTNISSFLAGVFTRKDQHVLVLALQIVDTILQKHSDIFLSSFVKEGVFFAVDALLMPETCSQSMFPMFNNLQLSNDPQKSTVRDLPRCLCYAFDISTSGSCTLEKDSVHNLAERIKANYFTTELLNSEKGLTDILQKLKTLSTALTELVKITTSDDTLSQHEEEFDGILHQIMSEISGRDPISTFEFVESGIVKSLVNYLSNGQCFGGDGGSTGEFGRSYIVEKRFEVFGKLFSSSSDLLFEDFSMLALIRKLQSALSSVENFPVILGNASKQKNSYATVPYGRCTTHPSLKVQFLRGEGETSFSDYYEDVVTVDPFSSLDAIETYLWPKVSAKRIKCVKSESSSPQCRSPDLKEADSTSIDIHEMQEDKANFSQFKLREEPGLVQKAGESAGSSEDHTDPVDQEQHTPSEEDTNMRTECPRSSSVEVASPKLSFYLDGQELDRKLTLYQSVLQRQSKVEHEIVTTAKLWSQVYRLTYRKGVKPKQSSCSQLCNHQTHNSSVLEKSLSYCNTPFFPGMSAPELASDVERSSATYSILFLLKSLEGINSFRFHLMSRERMYAFADGKFDDLDKLKILVSNVVQNEFVNSKLTEKLEQQMRDPLAVSIGGMPSWCSQLVNSCPFLFSFEARSKYFKLEALGQPQVQPHLSSQSNSNGRLQNNVALPRKKFLVYRNRILESATQMMDLHARKKVILEVEYDEEVGTGLGPTLEFYTLVGYEFQKFGLGLWREDHAPFTSTKSLIAEDNGINSCPFGLFPRPWSSAVSMSSGIEFEGVIKKFFLLGQVVAKAVQDGRVFDLPFSIAFYKVILGKDLTVYDIQSFDPGLGRALLEFQALVERKKYLESVHGEKSTFKLDSSFRNIRIEDLCLDFSLPGYPEYILSSGPDSEMVNMGNLGEYVSLVVDATVNSGIARQVDAFKSGFNQVFPVEHLQIFNEQELERLLCGERELWNSNDLLDHIKLDHGYTASSPPVVNLLEIIREFDREQQKAFLRFVTGAPRLPPGGLASLNPKLTIVRKVCNLTHPSFPFLHCGKWVDADLPSVMTCANYLKLPPYSSKERMKEKLLYAITEGQGSFHLS

Gene family

Gene family	subfamily
Ubiquitin Family	HECT

KEGG pathway

KO	Enzyme	pathway	mapID
K10590	TRIP12	Ubiquitin mediated proteolysis	map04120

Gene Ontology

GO term	Ontology	Name
GO:0004842	molecular_function	ubiquitin-protein transferase activity
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	22.610
	SRR3591706	second leaf	11.015
	SRR3591707	mature leaf	20.967
	SRR3591708	Shoot apex	12.112
	SRR3591709	Stem	32.288
	SRR3591710	White floral bud	42.537
	SRR3591711	White flower	42.618
	SRR3591712	Green floral bud	29.122
	SRR3591713	Yellow flower	33.944
SRP173429	SRR8316895	Juvenile bud stage	16.441
	SRR8316896	Juvenile bud stage	20.590
	SRR8316897	Juvenile bud stage	10.377
	SRR8316894	Third green stage	10.810
	SRR8316900	Third green stage	22.144
	SRR8316901	Third green stage	21.768
	SRR8316898	Complete white stage	10.468
	SRR8316899	Complete white stage	38.500
	SRR8316903	Complete white stage	23.002
	SRR8316902	Silver flowering stage	15.085
	SRR8316904	Silver flowering stage	25.562
	SRR8316905	Silver flowering stage	10.013
	SRR8316906	Gold flowering stage	28.899
	SRR8316907	Gold flowering stage	26.741
	SRR8316908	Gold flowering stage	33.050
SRP132670	SRR6706286	Control	19.035
	SRR6706287	Light intensity 50%	20.249
	SRR6706288	Light intensity 20%	22.679
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.651
	CNS0095593	Slightly white alabastrum(diploid) 2	10.447
	CNS0095594	Slightly white alabastrum(diploid) 3	12.550
	CNS0095595	Whole white alabastrum(diploid) 2	10.036
	CNS0095596	Whole white alabastrum(diploid) 3	8.331
	CNS0095597	Whole white alabastrum(diploid) 4	11.402
	CNS0095598	Silvery flower (diploied) 1	17.933
	CNS0095599	Silvery flower (diploied) 2	12.998
	CNS0095600	Silvery flower (diploied) 3	42.976
	CNS0095601	Golden flower (diploid) 1	15.138
	CNS0095602	Golden flower (diploid) 2	38.548
	CNS0095603	Golden flower (diploid) 3	36.301
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.025
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.031
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.028
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.534
	CNS0095608	Whole white alabastrum(tetraploid) 2	10.901
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.056
	CNS0095610	Silvery flower (tetraploid) 1	50.658
	CNS0095611	Silvery flower (tetraploid) 2	55.987
	CNS0095612	Silvery flower (tetraploid) 3	43.867
	CNS0095613	Golden flower (tetraploid) 1	20.195
	CNS0095614	Golden flower (tetraploid) 2	35.183
	CNS0095615	Golden flower (tetraploid) 3	38.296
CRA001975	CRR073297	Stem 1	19.227
	CRR073298	Stem 2	15.284
	CRR073299	Stem 3	12.643
	CRR073300	Leaf 1	19.036
	CRR073301	Leaf 2	13.129
	CRR073302	Leaf 3	9.699
	CRR073303	Juvenile bud 1	12.357
	CRR073304	Juvenile bud 2	7.117
	CRR073305	Juvenile bud 3	15.651
	CRR073306	Third green 1	3.828
	CRR073307	Third green 2	2.584
	CRR073308	Third green 3	4.289
	CRR073309	Second white 1	5.081
	CRR073310	Second white 2	8.218
	CRR073311	Second white 3	9.833
	CRR073312	Silver flowering 1	7.586
	CRR073313	Silver flowering 2	6.785
	CRR073314	Silver flowering 3	6.015
	CRR073315	Gold flowering 1	8.004
	CRR073316	Gold flowering 2	17.763
	CRR073317	Gold flowering 3	11.839
	CRR073318	Tawny withering 1	11.389
	CRR073319	Tawny withering 2	7.861
	CRR073320	Tawny withering 3	10.925