Gene detail

Detail information of GWHGAAZE013162

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006381502.1	8.1953E-108	hypothetical protein POPTR_0006s13460g [Populus trichocarpa]
Swissprot	tr\|P47927\|AP2_ARATH	3E-77	Floral homeotic protein APETALA 2
trEMBL	tr\|B9MT78\|B9MT78_POPTR	3E-108	Uncharacterized protein {ECO:0000313\|EMBL:ERP59299.1}
TAIR10	AT4G36920.2	4E-54	Integrase-type DNA-binding superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97839192	97844771	+
GWHAAZE00000003	mRNA	97839192	97844771	+
GWHAAZE00000003	exon	97839192	97839253	+
GWHAAZE00000003	exon	97840033	97840254	+
GWHAAZE00000003	exon	97841003	97841028	+
GWHAAZE00000003	exon	97841136	97841166	+
GWHAAZE00000003	exon	97841253	97841340	+
GWHAAZE00000003	exon	97841438	97841583	+
GWHAAZE00000003	exon	97841824	97841868	+
GWHAAZE00000003	exon	97841982	97842088	+
GWHAAZE00000003	exon	97842464	97842600	+
GWHAAZE00000003	exon	97842768	97842884	+
GWHAAZE00000003	exon	97844273	97844388	+
GWHAAZE00000003	exon	97844536	97844580	+
GWHAAZE00000003	exon	97844726	97844771	+
GWHAAZE00000003	CDS	97839192	97839253	+
GWHAAZE00000003	CDS	97840033	97840254	+
GWHAAZE00000003	CDS	97841003	97841028	+
GWHAAZE00000003	CDS	97841136	97841166	+
GWHAAZE00000003	CDS	97841253	97841340	+
GWHAAZE00000003	CDS	97841438	97841583	+
GWHAAZE00000003	CDS	97841824	97841868	+
GWHAAZE00000003	CDS	97841982	97842088	+
GWHAAZE00000003	CDS	97842464	97842600	+
GWHAAZE00000003	CDS	97842768	97842884	+
GWHAAZE00000003	CDS	97844273	97844388	+
GWHAAZE00000003	CDS	97844536	97844580	+
GWHAAZE00000003	CDS	97844726	97844771	+

Transcript Sequence
>GWHTAAZE013176 ATGATCAAAATTAAATCGACACTAAAACCGAGTCCTGTGATATCCACAGTCTCCTTAAAACGGAGCAGAGATGGAAATGATTTGAAAGAGAGTAAAAATGCTGAAGATGTTAGGTCTGGTTTTGTGACGAAACTACTTTTTCCTGCGCCTTCTACGGGGTATGGGTTATTGGATCTTCCGTTCAAGGAGGGGAATTATAGTCCACCAGAGGCGATGGAGTCGATGCTGCAGCTGAGACAACAGTTGAAGAAGAGTAGGAGAGGACCGAGATCTCGGAGTTCGCAGGATTTTGGGAAACAAGTTTATTTGGGGGGGTTTGACACTGCACATGCTGCTGCTAGGGCATATGATCGCACTGCAATTAAGTTCCGTGGACTTGATGCAGATATCAATTTTAGTATCAGTGACTATGACAGTGATCTTAAGCAGATGAAAAACTTGACGAAGGAAGAATTTGTACATATACTTCGTCGACAAAGCAGTGGGTTCTCTAGAGGAAGTTCTAAATTTAGGGGAGTTACACTGCACAAATGTGGACGATGGGAAGCTCGAATGGGACAGTTTCTTGGCAAGAAGTATATCTATCTTGGGTTGTTTGACAGTGAGATAGAAGCTGCAAGGGCTTATGACAAGGCTGCTATAAAATGTAATGGAAAGGAAGCAGTTACCAATTTTGAGCCAAACACATATGAAGAGGAATTGGGTTCCAAGGCTAATAACAATGGAGGCAGCAACCATAATCTGGATCTTAACTTGGCTATTGCACCCCCTTATTTTGCTGACGGCCCTAACAGGAATGACAACTTTGGGGGCTTTCATTCCCCTCCTCGCTTGGACAACATATCTAAGACTGGAATAATCGGGACCCAGAATTCTGCTTCCATGATAGTGGGCACTCAGCTGCCTCATGGCCAATATATGGTTTCTGATCATCCTACTCTCTGGAGTGGTGTAAATTCCAGTTTCTTTCCTGTGTCTGAGCTGCAGTTCATCAACCTCACTACTACACTAAGCCGATTGCCACAAATGCTAATAGCGAGTACCATTACTACTGTCCAAGCTGAAACCATAAGTGGCACTACTAATGTGGTGGCAATGTGGATACTGAAAAGTGGGACTGCTGATGTGGCGGTAATGCATTGGGCAATACCGAAAAGTGTTACTGTTGATGTGGTTGCAATGCATTGA

Network for GWHGAAZE013162

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.21	AP2	168	217	2.50E-09

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	AP2/ERF-ERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003700	molecular_function	DNA-binding transcription factor activity
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.484
	SRR3591706	second leaf	8.901
	SRR3591707	mature leaf	7.983
	SRR3591708	Shoot apex	9.826
	SRR3591709	Stem	5.870
	SRR3591710	White floral bud	17.683
	SRR3591711	White flower	19.573
	SRR3591712	Green floral bud	19.615
	SRR3591713	Yellow flower	14.498
SRP173429	SRR8316895	Juvenile bud stage	3.396
	SRR8316896	Juvenile bud stage	4.362
	SRR8316897	Juvenile bud stage	3.330
	SRR8316894	Third green stage	2.526
	SRR8316900	Third green stage	7.255
	SRR8316901	Third green stage	7.002
	SRR8316898	Complete white stage	1.770
	SRR8316899	Complete white stage	9.755
	SRR8316903	Complete white stage	4.442
	SRR8316902	Silver flowering stage	1.452
	SRR8316904	Silver flowering stage	2.780
	SRR8316905	Silver flowering stage	1.346
	SRR8316906	Gold flowering stage	5.559
	SRR8316907	Gold flowering stage	4.063
	SRR8316908	Gold flowering stage	6.039
SRP132670	SRR6706286	Control	8.611
	SRR6706287	Light intensity 50%	7.601
	SRR6706288	Light intensity 20%	9.742
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.680
	CNS0095593	Slightly white alabastrum(diploid) 2	4.923
	CNS0095594	Slightly white alabastrum(diploid) 3	3.858
	CNS0095595	Whole white alabastrum(diploid) 2	2.954
	CNS0095596	Whole white alabastrum(diploid) 3	4.597
	CNS0095597	Whole white alabastrum(diploid) 4	3.904
	CNS0095598	Silvery flower (diploied) 1	4.759
	CNS0095599	Silvery flower (diploied) 2	4.823
	CNS0095600	Silvery flower (diploied) 3	3.735
	CNS0095601	Golden flower (diploid) 1	3.467
	CNS0095602	Golden flower (diploid) 2	3.602
	CNS0095603	Golden flower (diploid) 3	3.210
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.125
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.045
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.329
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.222
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.644
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.674
	CNS0095610	Silvery flower (tetraploid) 1	4.509
	CNS0095611	Silvery flower (tetraploid) 2	5.609
	CNS0095612	Silvery flower (tetraploid) 3	5.365
	CNS0095613	Golden flower (tetraploid) 1	3.526
	CNS0095614	Golden flower (tetraploid) 2	6.285
	CNS0095615	Golden flower (tetraploid) 3	4.058
CRA001975	CRR073297	Stem 1	6.338
	CRR073298	Stem 2	5.255
	CRR073299	Stem 3	4.504
	CRR073300	Leaf 1	5.647
	CRR073301	Leaf 2	4.195
	CRR073302	Leaf 3	4.952
	CRR073303	Juvenile bud 1	4.204
	CRR073304	Juvenile bud 2	2.570
	CRR073305	Juvenile bud 3	2.746
	CRR073306	Third green 1	1.595
	CRR073307	Third green 2	0.810
	CRR073308	Third green 3	0.687
	CRR073309	Second white 1	0.597
	CRR073310	Second white 2	1.661
	CRR073311	Second white 3	1.154
	CRR073312	Silver flowering 1	0.988
	CRR073313	Silver flowering 2	0.697
	CRR073314	Silver flowering 3	0.611
	CRR073315	Gold flowering 1	1.648
	CRR073316	Gold flowering 2	2.238
	CRR073317	Gold flowering 3	0.492
	CRR073318	Tawny withering 1	1.910
	CRR073319	Tawny withering 2	1.037
	CRR073320	Tawny withering 3	0.933