Gene detail

Detail information of GWHGAAZE013160

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008242056.1	0	PREDICTED: two-component response regulator-like APRR7 isoform X1 [Prunus mume]
Swissprot	tr\|Q93WK5\|APRR7_ARATH	2E-131	Two-component response regulator-like APRR7
trEMBL	tr\|B9SGT0\|B9SGT0_RICCO	5E-179	Sensory transduction histidine kinase, putative {ECO:0000313\|EMBL:EEF37165.1}
TAIR10	AT5G02810.1	2E-109	pseudo-response regulator 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97767052	97774517	+
GWHAAZE00000003	mRNA	97767052	97774517	+
GWHAAZE00000003	exon	97767052	97767370	+
GWHAAZE00000003	exon	97768526	97768687	+
GWHAAZE00000003	exon	97768773	97768906	+
GWHAAZE00000003	exon	97769538	97769693	+
GWHAAZE00000003	exon	97771609	97771789	+
GWHAAZE00000003	exon	97772677	97773061	+
GWHAAZE00000003	exon	97773578	97774196	+
GWHAAZE00000003	exon	97774416	97774517	+
GWHAAZE00000003	CDS	97767052	97767370	+
GWHAAZE00000003	CDS	97768526	97768687	+
GWHAAZE00000003	CDS	97768773	97768906	+
GWHAAZE00000003	CDS	97769538	97769693	+
GWHAAZE00000003	CDS	97771609	97771789	+
GWHAAZE00000003	CDS	97772677	97773061	+
GWHAAZE00000003	CDS	97773578	97774196	+
GWHAAZE00000003	CDS	97774416	97774517	+

Transcript Sequence
>GWHTAAZE013174 ATGACCACTGATAGTGATGATGAGAAAATGTTAAGAGAAGTGAATCAAAATGGGGGAATTGAGCACAAGAGAATTGGAGGTGGTGAAATTGAGAGAATTGGGGATGATGGAGGAGATTCAAGGGATAGTCGGGGATGGGCAGTGCAAGGCCAAGATGGGCGGCAAGTACAACAACATCTGCGACATCATCAGCCTCAAGGGTCAATGGTTAGGTGGGAGAGATTTCTTCATGTTAGATCCATCAAGGTCCTCTTGGTGGAAAATGATGATTCCACACGCCATGTTGTCACAGCTTTGCTTCGCAATAGCAATTATGAAGTTATTCAAGCAGCTAATGGATTGCAAGCACGGAAAATCTTAGATGATCTAACCAATCATATTGACCTTGTATTAACCGAGGTAGTCATGCCTGGTATATCGGGCATTGGGCTTCTTTGCAAGATTATGAGTCACAATATACGCAAGAATATCCCTGTGATAATGATGTCATCACATGACTCAATGGCTCTAGTTTTCAATTGTTTGTCAAAAGGTGCGGTTGACTTTTTGGTGAAGCCTATTCGAAAGAATGAGCTTAAAAACCTCTGGCAGCATATTTGGCGTAGATGTCACAGTTCCAGTGGCAGTGGGAGTGAAAGTGGAACACAAAAATCTGTAAAGTCAAAAACTAACGTAAAGTCTGAGGAAGGCAGTAGCAGCTGTGAAGCTTATGATAGGAGGGCTAGTTTGTTTAAAGTAGGCGATGGAAGTGAAGATGGTAGTGGTACTAAGACATCTTGGACAAAACAAGCTGTAGAAGTTGACAGCTCCCCGGCAGTGTGTTCAAGGGATCACAGAGCAGAGTGTGCAGACAACACCTGTACCTTAGTCATCCGCTCAAATAACGGAGTCTCGGGTAACAAATGGGTACCTATGACCCCGTCAAGGGAATCCCAAGTTCAGGATGTACACGACCATGCTACAAAGGGAAAAGAGTCGGTTTCAGGCAAATGGAGAAATTTTGAATCACAATCCAATGGTCCAGTCAAAGCTCGGTCCAAACCTACAGGCACAGAGCAGAATACACTTCCTGAGCTCGAGGTTGTTGTAAACAGTAAGAGATTAAGCACGAGACCGGCTCACCACAGCGTAGAATATCCGTCCAACAAGTACGAAGCTGTAATTACCAACATTACTGATCCTCAAATGAATAGCAAAACCATGTGTGCTGATGATTCTAAAGAACTAATGGGAATTGAGCTTAGCTTAAAGAAGCTTAGAGGAGCTGAAGATGCTGGGAAAACTGTTCAAAGTGACCGCAATGTCATGAGATTTTCAGAGCTTTCAGCATTCTCAAGGTACAACACACCCTCAAGTGCTCCTAACCTTCCCAATGTGATCACCGGAAACAGCTCTCAACCTAGTAACACCACAGAAATTGTGAAGAAAGAATATGACTGTGATGTTAGATCTCGTTCAAACAGAAATATTCTCCAGCCAAGATCAGATGGGATTAGTAACAATATAGATGTGGGCTTAACTACACATAAACTTTCTACGAACCCAATAGTTTTCAAATCCGAAGCAGTTTCAACATCATCCATTCAGCACATTCATCACCATCACCATGTCCATCATTACCATGATGATTTTTCGTTAAAGAAACTGGCCATTGACTCTCCACATTGTGGGTCATCGAACGTATTGGGTGGGCCCATTGAAGGTGACCCAGAAAATTACATTTTGAACAGGAGTGCCTCGGGCAGTAAGCATGGAAGCAATAATCAGAATGGGAGCAGTACCACTGCTAAAGGTGGAGGTACAATGGTTGAAAGGGACGTCGGTTTAGGTGGGAAAAATGGAGGTGGTGATGCTGGTGGTAGTCAAAACATGATAGAACAAAACAAATCTGTGCAAAGAGAAGCTGCCTCAACCAAATTTTGTCAAAAGAGGAAGGACCGATGCTTCCAAAAGAAGGTCCGATATCAAAACAGGAAGAGACTAGCAGAAGAACAATTGCGCGTACAATTTGTTAGGCAAATGGGACATGACAGTTCAAACAGTGCTACGGATGAATAG

Network for GWHGAAZE013160

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00072.25	Response_reg	83	194	3.40E-22
PF06203.15	CCT	633	669	4.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Pseudo ARR-B

KEGG pathway

KO	Enzyme	pathway	mapID
K12129	PRR7	Circadian rhythm - plant	map04712

Gene Ontology

GO term	Ontology	Name
GO:0000160	biological_process	phosphorelay signal transduction system
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.861
	SRR3591706	second leaf	21.785
	SRR3591707	mature leaf	51.851
	SRR3591708	Shoot apex	19.473
	SRR3591709	Stem	55.440
	SRR3591710	White floral bud	46.649
	SRR3591711	White flower	38.994
	SRR3591712	Green floral bud	40.463
	SRR3591713	Yellow flower	37.542
SRP173429	SRR8316895	Juvenile bud stage	18.602
	SRR8316896	Juvenile bud stage	26.960
	SRR8316897	Juvenile bud stage	15.472
	SRR8316894	Third green stage	15.869
	SRR8316900	Third green stage	37.601
	SRR8316901	Third green stage	32.555
	SRR8316898	Complete white stage	22.143
	SRR8316899	Complete white stage	58.960
	SRR8316903	Complete white stage	38.196
	SRR8316902	Silver flowering stage	11.333
	SRR8316904	Silver flowering stage	22.728
	SRR8316905	Silver flowering stage	9.232
	SRR8316906	Gold flowering stage	25.267
	SRR8316907	Gold flowering stage	21.077
	SRR8316908	Gold flowering stage	32.135
SRP132670	SRR6706286	Control	26.864
	SRR6706287	Light intensity 50%	31.138
	SRR6706288	Light intensity 20%	32.131
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.506
	CNS0095593	Slightly white alabastrum(diploid) 2	15.555
	CNS0095594	Slightly white alabastrum(diploid) 3	13.108
	CNS0095595	Whole white alabastrum(diploid) 2	13.583
	CNS0095596	Whole white alabastrum(diploid) 3	14.998
	CNS0095597	Whole white alabastrum(diploid) 4	16.064
	CNS0095598	Silvery flower (diploied) 1	22.407
	CNS0095599	Silvery flower (diploied) 2	17.222
	CNS0095600	Silvery flower (diploied) 3	27.215
	CNS0095601	Golden flower (diploid) 1	19.428
	CNS0095602	Golden flower (diploid) 2	27.188
	CNS0095603	Golden flower (diploid) 3	25.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.266
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.237
	CNS0095606	Slightly white alabastrum(tetraploid) 3	25.476
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.141
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.810
	CNS0095609	Whole white alabastrum(tetraploid) 3	24.542
	CNS0095610	Silvery flower (tetraploid) 1	36.644
	CNS0095611	Silvery flower (tetraploid) 2	33.944
	CNS0095612	Silvery flower (tetraploid) 3	5.901
	CNS0095613	Golden flower (tetraploid) 1	21.644
	CNS0095614	Golden flower (tetraploid) 2	43.090
	CNS0095615	Golden flower (tetraploid) 3	30.577
CRA001975	CRR073297	Stem 1	10.304
	CRR073298	Stem 2	9.141
	CRR073299	Stem 3	7.533
	CRR073300	Leaf 1	7.064
	CRR073301	Leaf 2	7.067
	CRR073302	Leaf 3	3.090
	CRR073303	Juvenile bud 1	4.996
	CRR073304	Juvenile bud 2	1.780
	CRR073305	Juvenile bud 3	4.016
	CRR073306	Third green 1	0.505
	CRR073307	Third green 2	1.552
	CRR073308	Third green 3	1.753
	CRR073309	Second white 1	0.335
	CRR073310	Second white 2	0.254
	CRR073311	Second white 3	0.121
	CRR073312	Silver flowering 1	0.157
	CRR073313	Silver flowering 2	0.127
	CRR073314	Silver flowering 3	0.056
	CRR073315	Gold flowering 1	6.647
	CRR073316	Gold flowering 2	6.141
	CRR073317	Gold flowering 3	4.697
	CRR073318	Tawny withering 1	14.239
	CRR073319	Tawny withering 2	11.256
	CRR073320	Tawny withering 3	10.494