Detail information of GWHGAAZE013157


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010253469.10PREDICTED: DNA topoisomerase 6 subunit A [Nelumbo nucifera]
Swissprottr|Q9LZ03|TOP6A_ARATH0DNA topoisomerase 6 subunit A {ECO:0000255|HAMAP-Rule:MF_03164}
trEMBLtr|F6HQV1|F6HQV1_VITVI0DNA topoisomerase 6 subunit A {ECO:0000256|HAMAP-Rule:MF_03164}
TAIR10AT5G02820.10Spo11/DNA topoisomerase VI, subunit A protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9773454197736158-
GWHAAZE00000003mRNA9773454197736158-
GWHAAZE00000003exon9773553797736158-
GWHAAZE00000003exon9773454197735395-
GWHAAZE00000003CDS9773553797736158-
GWHAAZE00000003CDS9773474697735395-
GWHAAZE00000003three_prime_UTR9773454197734745-
Transcript Sequence

Network for GWHGAAZE013157

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04406.15TP6A_N1371988.60E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K10878SPO11 Meiosis - yeast map04113

Gene Ontology

GO term OntologyName
GO:0006265biological_processDNA topological change
GO:0006259biological_processDNA metabolic process
GO:0000737biological_processDNA catabolic process, endonucleolytic
GO:0005694cellular_componentchromosome
GO:0003677molecular_functionDNA binding
GO:0003918molecular_functionDNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity
GO:0003824molecular_functioncatalytic activity
GO:0005524molecular_functionATP binding
GO:0016889molecular_functionendodeoxyribonuclease activity, producing 3'-phosphomonoesters

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf18.094
SRR3591706second leaf10.904
SRR3591707mature leaf7.856
SRR3591708Shoot apex40.118
SRR3591709Stem12.601
SRR3591710White floral bud8.405
SRR3591711White flower14.610
SRR3591712Green floral bud16.453
SRR3591713Yellow flower9.904
SRP173429 SRR8316895Juvenile bud stage 7.627
SRR8316896Juvenile bud stage 9.116
SRR8316897Juvenile bud stage 3.792
SRR8316894Third green stage 4.205
SRR8316900Third green stage 11.566
SRR8316901Third green stage 11.429
SRR8316898Complete white stage 2.761
SRR8316899Complete white stage 14.192
SRR8316903Complete white stage 5.769
SRR8316902Silver flowering stage3.579
SRR8316904Silver flowering stage5.285
SRR8316905Silver flowering stage2.411
SRR8316906Gold flowering stage 6.467
SRR8316907Gold flowering stage 5.065
SRR8316908Gold flowering stage 7.672
SRP132670SRR6706286Control6.322
SRR6706287Light intensity 50%6.748
SRR6706288Light intensity 20%7.448
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.325
CNS0095593Slightly white alabastrum(diploid) 215.348
CNS0095594Slightly white alabastrum(diploid) 39.861
CNS0095595Whole white alabastrum(diploid) 26.193
CNS0095596Whole white alabastrum(diploid) 38.073
CNS0095597Whole white alabastrum(diploid) 46.850
CNS0095598Silvery flower (diploied) 113.924
CNS0095599Silvery flower (diploied) 211.838
CNS0095600Silvery flower (diploied) 39.682
CNS0095601Golden flower (diploid) 17.427
CNS0095602Golden flower (diploid) 210.971
CNS0095603Golden flower (diploid) 311.095
CNS0095604Slightly white alabastrum(tetraploid) 110.444
CNS0095605Slightly white alabastrum(tetraploid) 28.899
CNS0095606Slightly white alabastrum(tetraploid) 316.223
CNS0095607Whole white alabastrum(tetraploid) 14.440
CNS0095608Whole white alabastrum(tetraploid) 23.341
CNS0095609Whole white alabastrum(tetraploid) 37.892
CNS0095610Silvery flower (tetraploid) 18.602
CNS0095611Silvery flower (tetraploid) 28.085
CNS0095612Silvery flower (tetraploid) 35.147
CNS0095613Golden flower (tetraploid) 14.655
CNS0095614Golden flower (tetraploid) 29.184
CNS0095615Golden flower (tetraploid) 34.872
CRA001975CRR073297Stem 112.902
CRR073298Stem 214.574
CRR073299Stem 315.399
CRR073300Leaf 113.788
CRR073301Leaf 214.820
CRR073302Leaf 39.979
CRR073303Juvenile bud 111.125
CRR073304Juvenile bud 26.152
CRR073305Juvenile bud 312.776
CRR073306Third green 12.587
CRR073307Third green 21.426
CRR073308Third green 31.715
CRR073309Second white 14.070
CRR073310Second white 22.951
CRR073311Second white 33.443
CRR073312Silver flowering 11.409
CRR073313Silver flowering 21.901
CRR073314Silver flowering 32.023
CRR073315Gold flowering 18.048
CRR073316Gold flowering 211.069
CRR073317Gold flowering 310.084
CRR073318Tawny withering 114.226
CRR073319Tawny withering 212.055
CRR073320Tawny withering 316.828