Detail information of GWHGAAZE013155


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002525195.11.1439E-180zinc finger protein, putative [Ricinus communis]
Swissprottr|Q0JHZ2|C3H11_ORYSJ2E-167Zinc finger CCCH domain-containing protein 11
trEMBLtr|B9SGS6|B9SGS6_RICCO0Zinc finger protein, putative {ECO:0000313|EMBL:EEF37161.1}
TAIR10AT2G20280.15E-106Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9769611897701331-
GWHAAZE00000003mRNA9769611897701331-
GWHAAZE00000003exon9769611897696285-
GWHAAZE00000003exon9769776197697860-
GWHAAZE00000003exon9769797197698101-
GWHAAZE00000003exon9769842097698608-
GWHAAZE00000003exon9770001297700118-
GWHAAZE00000003exon9770022997700369-
GWHAAZE00000003exon9770048897700572-
GWHAAZE00000003exon9770122197701331-
GWHAAZE00000003CDS9770122197701331-
GWHAAZE00000003CDS9770048897700572-
GWHAAZE00000003CDS9770022997700369-
GWHAAZE00000003CDS9770001297700118-
GWHAAZE00000003CDS9769842097698608-
GWHAAZE00000003CDS9769797197698101-
GWHAAZE00000003CDS9769776197697860-
GWHAAZE00000003CDS9769611897696285-
Transcript Sequence

Network for GWHGAAZE013155

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16543.6DFRP_C2022854.30E-17
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf8.370
SRR3591706second leaf0.941
SRR3591707mature leaf4.340
SRR3591708Shoot apex2.632
SRR3591709Stem17.896
SRR3591710White floral bud28.253
SRR3591711White flower39.437
SRR3591712Green floral bud14.160
SRR3591713Yellow flower66.712
SRP173429 SRR8316895Juvenile bud stage 8.973
SRR8316896Juvenile bud stage 15.432
SRR8316897Juvenile bud stage 7.147
SRR8316894Third green stage 5.842
SRR8316900Third green stage 20.316
SRR8316901Third green stage 18.426
SRR8316898Complete white stage 23.654
SRR8316899Complete white stage 22.583
SRR8316903Complete white stage 31.260
SRR8316902Silver flowering stage22.818
SRR8316904Silver flowering stage27.907
SRR8316905Silver flowering stage17.503
SRR8316906Gold flowering stage 48.453
SRR8316907Gold flowering stage 44.231
SRR8316908Gold flowering stage 48.234
SRP132670SRR6706286Control20.650
SRR6706287Light intensity 50%17.778
SRR6706288Light intensity 20%17.169
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.448
CNS0095593Slightly white alabastrum(diploid) 214.972
CNS0095594Slightly white alabastrum(diploid) 317.290
CNS0095595Whole white alabastrum(diploid) 228.461
CNS0095596Whole white alabastrum(diploid) 328.063
CNS0095597Whole white alabastrum(diploid) 430.223
CNS0095598Silvery flower (diploied) 124.855
CNS0095599Silvery flower (diploied) 230.365
CNS0095600Silvery flower (diploied) 363.788
CNS0095601Golden flower (diploid) 126.743
CNS0095602Golden flower (diploid) 246.199
CNS0095603Golden flower (diploid) 349.491
CNS0095604Slightly white alabastrum(tetraploid) 124.798
CNS0095605Slightly white alabastrum(tetraploid) 221.813
CNS0095606Slightly white alabastrum(tetraploid) 311.541
CNS0095607Whole white alabastrum(tetraploid) 133.857
CNS0095608Whole white alabastrum(tetraploid) 233.914
CNS0095609Whole white alabastrum(tetraploid) 326.356
CNS0095610Silvery flower (tetraploid) 196.747
CNS0095611Silvery flower (tetraploid) 275.709
CNS0095612Silvery flower (tetraploid) 3112.544
CNS0095613Golden flower (tetraploid) 178.839
CNS0095614Golden flower (tetraploid) 290.693
CNS0095615Golden flower (tetraploid) 346.217
CRA001975CRR073297Stem 112.638
CRR073298Stem 211.175
CRR073299Stem 37.753
CRR073300Leaf 117.264
CRR073301Leaf 216.057
CRR073302Leaf 39.057
CRR073303Juvenile bud 116.380
CRR073304Juvenile bud 214.803
CRR073305Juvenile bud 310.257
CRR073306Third green 123.697
CRR073307Third green 220.557
CRR073308Third green 325.713
CRR073309Second white 110.537
CRR073310Second white 222.620
CRR073311Second white 317.164
CRR073312Silver flowering 110.800
CRR073313Silver flowering 211.944
CRR073314Silver flowering 321.155
CRR073315Gold flowering 11.084
CRR073316Gold flowering 23.120
CRR073317Gold flowering 30.670
CRR073318Tawny withering 110.450
CRR073319Tawny withering 28.041
CRR073320Tawny withering 35.490