Gene detail

Detail information of GWHGAAZE013143

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06673.1	3.0076E-126	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9FYB7\|RSZ32_ARATH	4E-92	Serine/arginine-rich splicing factor RS2Z32
trEMBL	tr\|A0A068UGE3\|A0A068UGE3_COFCA	1E-126	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06673.1}
TAIR10	AT2G37340.1	6E-70	arginine/serine-rich zinc knuckle-containing protein 33

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97511507	97516485	+
GWHAAZE00000003	mRNA	97511507	97516485	+
GWHAAZE00000003	exon	97511507	97511613	+
GWHAAZE00000003	exon	97512642	97512681	+
GWHAAZE00000003	exon	97513105	97513200	+
GWHAAZE00000003	exon	97514901	97515097	+
GWHAAZE00000003	exon	97515190	97515285	+
GWHAAZE00000003	exon	97516080	97516485	+
GWHAAZE00000003	CDS	97511507	97511613	+
GWHAAZE00000003	CDS	97512642	97512681	+
GWHAAZE00000003	CDS	97513105	97513200	+
GWHAAZE00000003	CDS	97514901	97515097	+
GWHAAZE00000003	CDS	97515190	97515285	+
GWHAAZE00000003	CDS	97516080	97516485	+

Transcript Sequence
>GWHTAAZE013157 ATGCCTCGTTATGATGATCGATATGGTCACACTCGACTCTATGTTGGTCGATTATCTTCGCGGACACGGTCACGTGACTTGGAGCGCCTCTTTAGCAGATATGGGAGAGTTCGAGATGTGGATATGAAGCACGACTTTGCCTTCGTCGACTTCAGTGATCCCCGGGATGCTGATGATGCAAGGTATAGCTTAAACGGCCGGGATTTCGACGGAAGTCGACTTATTGTGGAATTTGCAAAGGGAGCGCCACGTGGACCCGGTGGGTCTCGAGAATACCTGGGTAGAGGTCCACCTCCTGGGTCGGGCCGATGCTTCAACTGTGGGCTCGATGGTCACTGGGCACGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTATCGCTGTGGAGAAAGAGGTCACATAGAAAGAAATTGCCAGAACAGTCCTAAGAAGCTCAAGCGTGGTCGGAGTTACTCGCGGTCACCTGAGCGATCCCGCTCTCCTCACCGTGGTAGAAGCCGGAGTCCAAGTTATAGCCGTAGTCGCAGCTACAGTAGGTCTAGATCGCCTCCAAAGAGAGGGAGGGTGGAGAAGAAGAGGTCAAGGAGCCCGCGCTATAGTAGCCCTGAGCCAAGGGATAGCCCCCTTCCCACCAAGGCAAGGAACCGGAGCCCAACGCCTGATGACAGAAGCCCTAGCAATCGAGCTAGCCCTTCTCCCAAGAGAAGTCAGCGCACAAATGAGCGAGATGGGTCCGAGTACAGCGGGAGCCCCAAGGAGAAGAGCCGAAGCCCCATAAGCCCCGAAAGGGAGGACAGCCCTAAGGCTAGGAGGTACCATAGCCCTTCTGAAGCCAACGGTCACAGTCGAAGCCCTAGCCTGAGTCCTAGAAATAACAAGAGCCCTGTTGCTGATGAGGACGATTATCGCGGGTCCCCAAGGGGAAGCGAGTCACCTTGA

Network for GWHGAAZE013143

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00076.23	RRM_1	13	74	1.10E-14
PF00098.24	zf-CCHC	103	118	1.20E-05
PF00098.24	zf-CCHC	124	140	8.40E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12896	SFRS7	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	69.428
	SRR3591706	second leaf	48.269
	SRR3591707	mature leaf	57.852
	SRR3591708	Shoot apex	100.820
	SRR3591709	Stem	85.982
	SRR3591710	White floral bud	82.749
	SRR3591711	White flower	89.473
	SRR3591712	Green floral bud	63.703
	SRR3591713	Yellow flower	82.287
SRP173429	SRR8316895	Juvenile bud stage	49.702
	SRR8316896	Juvenile bud stage	69.992
	SRR8316897	Juvenile bud stage	28.493
	SRR8316894	Third green stage	23.533
	SRR8316900	Third green stage	58.678
	SRR8316901	Third green stage	69.969
	SRR8316898	Complete white stage	36.025
	SRR8316899	Complete white stage	96.669
	SRR8316903	Complete white stage	57.023
	SRR8316902	Silver flowering stage	42.413
	SRR8316904	Silver flowering stage	37.309
	SRR8316905	Silver flowering stage	21.119
	SRR8316906	Gold flowering stage	76.517
	SRR8316907	Gold flowering stage	87.113
	SRR8316908	Gold flowering stage	85.810
SRP132670	SRR6706286	Control	67.206
	SRR6706287	Light intensity 50%	63.248
	SRR6706288	Light intensity 20%	60.726
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	79.074
	CNS0095593	Slightly white alabastrum(diploid) 2	78.183
	CNS0095594	Slightly white alabastrum(diploid) 3	72.672
	CNS0095595	Whole white alabastrum(diploid) 2	52.631
	CNS0095596	Whole white alabastrum(diploid) 3	48.816
	CNS0095597	Whole white alabastrum(diploid) 4	46.011
	CNS0095598	Silvery flower (diploied) 1	88.501
	CNS0095599	Silvery flower (diploied) 2	67.363
	CNS0095600	Silvery flower (diploied) 3	67.964
	CNS0095601	Golden flower (diploid) 1	78.752
	CNS0095602	Golden flower (diploid) 2	73.194
	CNS0095603	Golden flower (diploid) 3	72.702
	CNS0095604	Slightly white alabastrum(tetraploid) 1	77.762
	CNS0095605	Slightly white alabastrum(tetraploid) 2	80.296
	CNS0095606	Slightly white alabastrum(tetraploid) 3	126.707
	CNS0095607	Whole white alabastrum(tetraploid) 1	53.530
	CNS0095608	Whole white alabastrum(tetraploid) 2	40.802
	CNS0095609	Whole white alabastrum(tetraploid) 3	77.535
	CNS0095610	Silvery flower (tetraploid) 1	85.825
	CNS0095611	Silvery flower (tetraploid) 2	66.215
	CNS0095612	Silvery flower (tetraploid) 3	98.771
	CNS0095613	Golden flower (tetraploid) 1	76.536
	CNS0095614	Golden flower (tetraploid) 2	83.843
	CNS0095615	Golden flower (tetraploid) 3	63.933
CRA001975	CRR073297	Stem 1	84.660
	CRR073298	Stem 2	85.506
	CRR073299	Stem 3	84.371
	CRR073300	Leaf 1	83.085
	CRR073301	Leaf 2	86.751
	CRR073302	Leaf 3	67.669
	CRR073303	Juvenile bud 1	59.167
	CRR073304	Juvenile bud 2	40.456
	CRR073305	Juvenile bud 3	64.206
	CRR073306	Third green 1	47.211
	CRR073307	Third green 2	45.045
	CRR073308	Third green 3	40.934
	CRR073309	Second white 1	29.387
	CRR073310	Second white 2	31.391
	CRR073311	Second white 3	26.059
	CRR073312	Silver flowering 1	32.106
	CRR073313	Silver flowering 2	34.607
	CRR073314	Silver flowering 3	38.611
	CRR073315	Gold flowering 1	36.008
	CRR073316	Gold flowering 2	45.900
	CRR073317	Gold flowering 3	37.699
	CRR073318	Tawny withering 1	72.033
	CRR073319	Tawny withering 2	69.807
	CRR073320	Tawny withering 3	74.888