Gene detail

Detail information of GWHGAAZE013123

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG30820.1	3.2335E-133	Soluble inorganic pyrophosphatase [Gossypium arboreum]
Swissprot	tr\|Q43187\|IPYR_SOLTU	1E-116	Soluble inorganic pyrophosphatase
trEMBL	tr\|A0A068UDL4\|A0A068UDL4_COFCA	2E-133	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06650.1}
TAIR10	AT3G53620.1	1E-97	pyrophosphorylase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97158170	97161537	-
GWHAAZE00000003	mRNA	97158170	97161537	-
GWHAAZE00000003	exon	97161297	97161537	-
GWHAAZE00000003	exon	97161184	97161212	-
GWHAAZE00000003	exon	97160313	97160378	-
GWHAAZE00000003	exon	97160107	97160214	-
GWHAAZE00000003	exon	97159486	97159528	-
GWHAAZE00000003	exon	97159263	97159421	-
GWHAAZE00000003	exon	97159032	97159113	-
GWHAAZE00000003	exon	97158170	97158478	-
GWHAAZE00000003	CDS	97161297	97161537	-
GWHAAZE00000003	CDS	97161184	97161212	-
GWHAAZE00000003	CDS	97160313	97160378	-
GWHAAZE00000003	CDS	97160107	97160214	-
GWHAAZE00000003	CDS	97159486	97159528	-
GWHAAZE00000003	CDS	97159263	97159421	-
GWHAAZE00000003	CDS	97159032	97159113	-
GWHAAZE00000003	CDS	97158436	97158478	-
GWHAAZE00000003	three_prime_UTR	97158170	97158435	-

Transcript Sequence
>GWHTAAZE013137 ATGGATTTGCAGTTATATGTGCAGCTTGCAGTTATGACTCCACCTATTGAGACAGAGAATGAAGCTCCTATTGAGGCAGTGAACCAAGCTCCTGTTGAAACAGTGAATAAAGCTCCTGTTGAGACAGTGAAAAAAGCTCCTGAATCTCATCGAGCCTCGCATCCTCCTCTTAATGAAAGAATACTTTCATCCATGACTAGGAGATCAGTTGCTGCACATCCTTGGCATGATCTTGAAATAGGACCTGGAACCCCCAAGTTTTTCAACTGTGTGGTTGAAATTAGTAAAGGGAGTAAGGTGAAATATGAACTTGACAAGAAAACTGGACTGATCAAGGTTGATCGTGTTCTTTACTCATCAGTTGTGTACCCCCATAACTATGGCTTTATCCCTCGTACTCTATGTGAGGACAATGACCCCTTGGATGTGTTGGTCATCATGCAGGAACCAATTCTTCCAGGCTGCTTTCTTCGTGCTAGAGCAATAGGAGAATTATATAATTTTGTTAATATATATATATTACAGGGAGAAAAAGATGACAAGATAATTGCAGTCTGTGCCGATGATCCTGAGTATCGAAACTTTGCTGACATTAAGGAGCTTCCACCTCATCGCTTAGCCGAGATCCGCCGCTTTTTTGAAGATTACAAGAAAAATGAGAACAAAGAAGTTGCAGTTGATGATTTTCTGCCTGCCACAAAAGCATATGAAGCCGTCCAGCACTCCATGAATCTCTATGCTGATTACATAGTGGAGAGCCTGAGGCGGTAGTTTCTTCGCCCGCGCAGGAACTATGGGTGGTGAAGCTGAAGAATGTCCTATTTCGCATGGAAGATTTGAAGATGTTGCTGTTGTTTTATTACTTTTTGTTCATTTAAAAATACAACATATATATATATATATGTGTTCTTTGAGAAGCTGTATTGTACTATATGCTTCTAATATTGTACATTAATTTGGCACTAATACCACCTTTTTATACGATAATTACAAATAGTCATCTAAACAATATAAATGAAGTTGAGATGCTTATAATA

Network for GWHGAAZE013123

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00719.20	Pyrophosphatase	90	246	1.80E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01507	ppa	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0006796	biological_process	phosphate-containing compound metabolic process
GO:0005737	cellular_component	cytoplasm
GO:0000287	molecular_function	magnesium ion binding
GO:0004427	molecular_function	inorganic diphosphatase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	58.594
	SRR3591706	second leaf	46.132
	SRR3591707	mature leaf	54.136
	SRR3591708	Shoot apex	54.248
	SRR3591709	Stem	88.258
	SRR3591710	White floral bud	77.801
	SRR3591711	White flower	57.747
	SRR3591712	Green floral bud	122.817
	SRR3591713	Yellow flower	50.644
SRP173429	SRR8316895	Juvenile bud stage	38.047
	SRR8316896	Juvenile bud stage	65.870
	SRR8316897	Juvenile bud stage	26.591
	SRR8316894	Third green stage	36.477
	SRR8316900	Third green stage	85.292
	SRR8316901	Third green stage	98.964
	SRR8316898	Complete white stage	38.291
	SRR8316899	Complete white stage	168.962
	SRR8316903	Complete white stage	62.237
	SRR8316902	Silver flowering stage	30.283
	SRR8316904	Silver flowering stage	47.471
	SRR8316905	Silver flowering stage	22.857
	SRR8316906	Gold flowering stage	51.498
	SRR8316907	Gold flowering stage	71.087
	SRR8316908	Gold flowering stage	57.044
SRP132670	SRR6706286	Control	35.941
	SRR6706287	Light intensity 50%	40.015
	SRR6706288	Light intensity 20%	43.843
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	61.932
	CNS0095593	Slightly white alabastrum(diploid) 2	73.326
	CNS0095594	Slightly white alabastrum(diploid) 3	52.662
	CNS0095595	Whole white alabastrum(diploid) 2	49.931
	CNS0095596	Whole white alabastrum(diploid) 3	50.006
	CNS0095597	Whole white alabastrum(diploid) 4	57.423
	CNS0095598	Silvery flower (diploied) 1	40.661
	CNS0095599	Silvery flower (diploied) 2	35.261
	CNS0095600	Silvery flower (diploied) 3	34.098
	CNS0095601	Golden flower (diploid) 1	33.081
	CNS0095602	Golden flower (diploid) 2	32.902
	CNS0095603	Golden flower (diploid) 3	30.026
	CNS0095604	Slightly white alabastrum(tetraploid) 1	45.884
	CNS0095605	Slightly white alabastrum(tetraploid) 2	40.743
	CNS0095606	Slightly white alabastrum(tetraploid) 3	63.735
	CNS0095607	Whole white alabastrum(tetraploid) 1	31.079
	CNS0095608	Whole white alabastrum(tetraploid) 2	32.354
	CNS0095609	Whole white alabastrum(tetraploid) 3	40.701
	CNS0095610	Silvery flower (tetraploid) 1	26.866
	CNS0095611	Silvery flower (tetraploid) 2	34.489
	CNS0095612	Silvery flower (tetraploid) 3	39.383
	CNS0095613	Golden flower (tetraploid) 1	23.755
	CNS0095614	Golden flower (tetraploid) 2	27.688
	CNS0095615	Golden flower (tetraploid) 3	25.290
CRA001975	CRR073297	Stem 1	59.255
	CRR073298	Stem 2	58.732
	CRR073299	Stem 3	58.064
	CRR073300	Leaf 1	82.898
	CRR073301	Leaf 2	79.293
	CRR073302	Leaf 3	74.517
	CRR073303	Juvenile bud 1	88.989
	CRR073304	Juvenile bud 2	60.840
	CRR073305	Juvenile bud 3	92.030
	CRR073306	Third green 1	20.748
	CRR073307	Third green 2	26.865
	CRR073308	Third green 3	22.742
	CRR073309	Second white 1	41.089
	CRR073310	Second white 2	31.167
	CRR073311	Second white 3	26.216
	CRR073312	Silver flowering 1	24.126
	CRR073313	Silver flowering 2	19.568
	CRR073314	Silver flowering 3	19.478
	CRR073315	Gold flowering 1	87.223
	CRR073316	Gold flowering 2	101.759
	CRR073317	Gold flowering 3	86.859
	CRR073318	Tawny withering 1	77.520
	CRR073319	Tawny withering 2	83.834
	CRR073320	Tawny withering 3	81.899