Detail information of GWHGAAZE013120


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010047513.11.568E-88PREDICTED: actin-depolymerizing factor 2 [Eucalyptus grandis]
Swissprottr|Q9FVI2|ADF1_PETHY2E-85Actin-depolymerizing factor 1
trEMBLtr|B9T4D2|B9T4D2_RICCO2E-88Actin depolymerizing factor, putative {ECO:0000313|EMBL:EEF29273.1}
TAIR10AT5G59890.13E-54actin depolymerizing factor 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9707959897080659-
GWHAAZE00000003mRNA9707959897080659-
GWHAAZE00000003exon9707959897079748-
GWHAAZE00000003exon9708041297080659-
GWHAAZE00000003CDS9708041297080659-
GWHAAZE00000003CDS9707959897079748-
Transcript Sequence

Network for GWHGAAZE013120

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00241.21Cofilin_ADF71292.10E-37
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05765CFL Regulation of actin cytoskeleton map04810
Fc gamma R-mediated phagocytosismap04666
Axon guidancemap04360

Gene Ontology

GO term OntologyName
GO:0030042biological_processactin filament depolymerization
GO:0015629cellular_componentactin cytoskeleton
GO:0003779molecular_functionactin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf490.788
SRR3591706second leaf145.784
SRR3591707mature leaf155.879
SRR3591708Shoot apex192.305
SRR3591709Stem514.243
SRR3591710White floral bud372.188
SRR3591711White flower381.173
SRR3591712Green floral bud311.178
SRR3591713Yellow flower232.854
SRP173429 SRR8316895Juvenile bud stage 143.507
SRR8316896Juvenile bud stage 214.839
SRR8316897Juvenile bud stage 106.989
SRR8316894Third green stage 80.460
SRR8316900Third green stage 303.602
SRR8316901Third green stage 273.941
SRR8316898Complete white stage 206.802
SRR8316899Complete white stage 507.817
SRR8316903Complete white stage 279.530
SRR8316902Silver flowering stage222.671
SRR8316904Silver flowering stage207.181
SRR8316905Silver flowering stage107.201
SRR8316906Gold flowering stage 303.577
SRR8316907Gold flowering stage 290.360
SRR8316908Gold flowering stage 276.855
SRP132670SRR6706286Control280.380
SRR6706287Light intensity 50%303.406
SRR6706288Light intensity 20%329.657
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1232.155
CNS0095593Slightly white alabastrum(diploid) 2300.104
CNS0095594Slightly white alabastrum(diploid) 3226.224
CNS0095595Whole white alabastrum(diploid) 2233.361
CNS0095596Whole white alabastrum(diploid) 3210.259
CNS0095597Whole white alabastrum(diploid) 4222.779
CNS0095598Silvery flower (diploied) 1230.328
CNS0095599Silvery flower (diploied) 2230.794
CNS0095600Silvery flower (diploied) 3387.992
CNS0095601Golden flower (diploid) 1225.636
CNS0095602Golden flower (diploid) 2320.297
CNS0095603Golden flower (diploid) 3302.501
CNS0095604Slightly white alabastrum(tetraploid) 1235.221
CNS0095605Slightly white alabastrum(tetraploid) 2185.753
CNS0095606Slightly white alabastrum(tetraploid) 3307.011
CNS0095607Whole white alabastrum(tetraploid) 1185.267
CNS0095608Whole white alabastrum(tetraploid) 2160.883
CNS0095609Whole white alabastrum(tetraploid) 3234.794
CNS0095610Silvery flower (tetraploid) 1352.157
CNS0095611Silvery flower (tetraploid) 2415.378
CNS0095612Silvery flower (tetraploid) 3357.739
CNS0095613Golden flower (tetraploid) 1283.129
CNS0095614Golden flower (tetraploid) 2329.953
CNS0095615Golden flower (tetraploid) 3257.762
CRA001975CRR073297Stem 1468.831
CRR073298Stem 2478.207
CRR073299Stem 3580.096
CRR073300Leaf 1583.834
CRR073301Leaf 2638.678
CRR073302Leaf 3688.822
CRR073303Juvenile bud 1857.619
CRR073304Juvenile bud 2717.028
CRR073305Juvenile bud 3749.974
CRR073306Third green 1693.663
CRR073307Third green 2791.100
CRR073308Third green 3699.277
CRR073309Second white 1473.500
CRR073310Second white 2338.778
CRR073311Second white 3231.575
CRR073312Silver flowering 1229.680
CRR073313Silver flowering 2311.563
CRR073314Silver flowering 3234.615
CRR073315Gold flowering 1746.374
CRR073316Gold flowering 2728.137
CRR073317Gold flowering 3664.844
CRR073318Tawny withering 1935.331
CRR073319Tawny withering 2834.207
CRR073320Tawny withering 31052.507