Gene detail

Detail information of GWHGAAZE013117

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP06636.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|O80925\|AGD7_ARATH	2E-180	ADP-ribosylation factor GTPase-activating protein AGD7
trEMBL	tr\|A0A068UDS4\|A0A068UDS4_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_22 {ECO:0000313\|EMBL:CDP06636.1}
TAIR10	AT3G53710.2	9E-126	ARF-GAP domain 6

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97042182	97047215	-
GWHAAZE00000003	mRNA	97042182	97047215	-
GWHAAZE00000003	exon	97042182	97042703	-
GWHAAZE00000003	exon	97045056	97045145	-
GWHAAZE00000003	exon	97045894	97046289	-
GWHAAZE00000003	exon	97046745	97047215	-
GWHAAZE00000003	CDS	97046745	97047215	-
GWHAAZE00000003	CDS	97045894	97046289	-
GWHAAZE00000003	CDS	97045056	97045145	-
GWHAAZE00000003	CDS	97042182	97042703	-

Transcript Sequence
>GWHTAAZE013131 ATGGCGGCAAATAGACGCCTCCGAGAATTACAGTCACGGCCGGGGAACAGGATATGCGTAGATTGCTCGCAAAAGAATCCGCAATGGGCGTCGGTTTCGTACGGAGTGTTTATGTGCTTAGAATGCTCCGGCAAGCACCGAGGCCTCGGTGTTCACATCTCGTTCGTCAGATCCGTCACGATGGATTCGTGGTCCGAGATCCAGCTGAAGAAAATGGAGTCAGGGGGCAACGACCAGCTAAATCAGTTTTTGGCTAGGTATGGTGTTCCCAAAGAGACCGATATTGTGGTTAAGTATAATACTAATGCCGCATCGGTTTATAGAGATCGGATCCAAGCCCTAGCTGAAGGTCAGCCGTGGCGAGATCCGCCTGTTATTAAAGAAGGCTTAGGAGGAGGAGGCGGCGCCGCCGCCGCTAATAAGAATAAGAAGCCACCGTTGAGTGGTGGTAGAAATGGTAATGTAAGATTTCCTTTCAGTGGTCTTACAGGTAATTCCTGTGGAAATGGAGACTGGGATAGTTGGGACAATTACGACGACTTGGGGTTCAGATCGTCCTCGTCATCTCCAGATATTAGGCGGAACCAGTCGACCGGAGATTTTAGGAGCGGTGCTGGCGGTGGCGGTGGAAGTGGAAGTGGGGGTTTTCTGGCGAGGTCGAAGTCCACTGAGTATATAACGCGTGCACAATTAGAGGCTTCGGCTGCGAATAAGGAAACTTTTTTTGCTAGGAAGATGGTGGAGAATGAGTCTAGGCCAGATGGTTTACCTCCCTCCCAAGGAGGGAAGTATGTAGGGTTTGGATCATCTCCGGCTCCAGTGGCCCGTATTAATTCTCAAGGGGATGTTCTCTCTGCTGTTTCCCAGGGATTTGGTAGGTTATCTGTAGTTGCTGCATCTGCAGCTCAAACTGCTGCCAATGTTGTCCGTGTAGGCACAGAGGAGATCAGTTCCAAGGTGAGAGATGGGGGATATGATTACAAGGTGAATGAAACAGTCAATGTCGTCACTGCTAAGACGACCGAGATCGGACAGAGGACTTGGGGGATTATGCGAGGCGTCATGGCTTTAGCTTCACAGAAAGTTGAGGAGTTCACCAAAGATGACCTCAGCCCCACCCCCACCCCCACCTGGAAGAACGACAACTGGCAAAGAAATGAGACAGGCAGTAACAACAACAACAACGGATATTACCAAGAATCCTCCCAAGGATGGAACTCTGGCACTGGCTCCGGCAGGTCCGTCCAGAATTCCAATTCTGTCAGCTCGGCCTCGTGGGATGATTGGGGTGATAGTAAAGACAACAATAACAACGACGACGGAAAAGTGACAACAGTGTCCCATAACGGGGACGAGTGGGCAGGATGGGATGATGGTAAAGACGATAACGAGTACAGCAATTTCTACGCGGCCGATAGCAAAGTTTGGGGCAGCAATGGGAAATCAGATACCAATTGGACAGGGGGAGGGTTTAAGTAA

Network for GWHGAAZE013117

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01412.19	ArfGap	5	102	8.20E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12492	ARFGAP1	Endocytosis	map04144

Gene Ontology

GO term	Ontology	Name
GO:0005096	molecular_function	GTPase activator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	13.341
	SRR3591706	second leaf	7.748
	SRR3591707	mature leaf	5.491
	SRR3591708	Shoot apex	9.464
	SRR3591709	Stem	10.588
	SRR3591710	White floral bud	24.605
	SRR3591711	White flower	7.004
	SRR3591712	Green floral bud	19.346
	SRR3591713	Yellow flower	5.424
SRP173429	SRR8316895	Juvenile bud stage	6.735
	SRR8316896	Juvenile bud stage	9.465
	SRR8316897	Juvenile bud stage	2.906
	SRR8316894	Third green stage	4.710
	SRR8316900	Third green stage	16.990
	SRR8316901	Third green stage	17.662
	SRR8316898	Complete white stage	8.148
	SRR8316899	Complete white stage	17.954
	SRR8316903	Complete white stage	10.159
	SRR8316902	Silver flowering stage	4.371
	SRR8316904	Silver flowering stage	5.380
	SRR8316905	Silver flowering stage	3.138
	SRR8316906	Gold flowering stage	11.534
	SRR8316907	Gold flowering stage	11.298
	SRR8316908	Gold flowering stage	9.825
SRP132670	SRR6706286	Control	27.949
	SRR6706287	Light intensity 50%	27.174
	SRR6706288	Light intensity 20%	26.308
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.210
	CNS0095593	Slightly white alabastrum(diploid) 2	12.287
	CNS0095594	Slightly white alabastrum(diploid) 3	9.898
	CNS0095595	Whole white alabastrum(diploid) 2	15.260
	CNS0095596	Whole white alabastrum(diploid) 3	14.291
	CNS0095597	Whole white alabastrum(diploid) 4	18.333
	CNS0095598	Silvery flower (diploied) 1	6.378
	CNS0095599	Silvery flower (diploied) 2	6.127
	CNS0095600	Silvery flower (diploied) 3	8.397
	CNS0095601	Golden flower (diploid) 1	6.095
	CNS0095602	Golden flower (diploid) 2	9.029
	CNS0095603	Golden flower (diploid) 3	8.996
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.324
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.091
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	27.248
	CNS0095608	Whole white alabastrum(tetraploid) 2	33.147
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.942
	CNS0095610	Silvery flower (tetraploid) 1	6.964
	CNS0095611	Silvery flower (tetraploid) 2	6.659
	CNS0095612	Silvery flower (tetraploid) 3	8.784
	CNS0095613	Golden flower (tetraploid) 1	4.800
	CNS0095614	Golden flower (tetraploid) 2	9.414
	CNS0095615	Golden flower (tetraploid) 3	8.229
CRA001975	CRR073297	Stem 1	16.974
	CRR073298	Stem 2	16.164
	CRR073299	Stem 3	16.518
	CRR073300	Leaf 1	23.923
	CRR073301	Leaf 2	21.868
	CRR073302	Leaf 3	18.398
	CRR073303	Juvenile bud 1	27.165
	CRR073304	Juvenile bud 2	31.352
	CRR073305	Juvenile bud 3	22.250
	CRR073306	Third green 1	15.716
	CRR073307	Third green 2	15.474
	CRR073308	Third green 3	13.455
	CRR073309	Second white 1	6.795
	CRR073310	Second white 2	8.040
	CRR073311	Second white 3	8.501
	CRR073312	Silver flowering 1	12.012
	CRR073313	Silver flowering 2	11.143
	CRR073314	Silver flowering 3	13.395
	CRR073315	Gold flowering 1	11.081
	CRR073316	Gold flowering 2	8.452
	CRR073317	Gold flowering 3	9.066
	CRR073318	Tawny withering 1	20.285
	CRR073319	Tawny withering 2	17.639
	CRR073320	Tawny withering 3	21.508