Detail information of GWHGAAZE013116


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007027070.13.91641E-70RNA-binding family protein [Theobroma cacao]
Swissprottr|Q8L773|THO4A_ARATH2E-50THO complex subunit 4A
trEMBLtr|A0A061ET42|A0A061ET42_THECC1E-70RNA-binding family protein {ECO:0000313|EMBL:EOY07572.1}
TAIR10AT5G59950.11E-41RNA-binding (RRM/RBD/RNP motifs) family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9703612997039062+
GWHAAZE00000003mRNA9703612997039062+
GWHAAZE00000003exon9703612997036209+
GWHAAZE00000003exon9703705797037209+
GWHAAZE00000003exon9703867797038745+
GWHAAZE00000003exon9703882697039062+
GWHAAZE00000003CDS9703612997036209+
GWHAAZE00000003CDS9703705797037209+
GWHAAZE00000003CDS9703867797038745+
GWHAAZE00000003CDS9703882697039062+
Transcript Sequence

Network for GWHGAAZE013116

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.23RRM_1631318.70E-17
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K12881THOC4, ALY Spliceosome map03040
RNA transportmap03013
mRNA surveillance pathwaymap03015

Gene Ontology

GO term OntologyName
GO:0003676molecular_functionnucleic acid binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf24.931
SRR3591706second leaf16.795
SRR3591707mature leaf17.522
SRR3591708Shoot apex25.385
SRR3591709Stem18.247
SRR3591710White floral bud22.952
SRR3591711White flower29.161
SRR3591712Green floral bud22.219
SRR3591713Yellow flower23.323
SRP173429 SRR8316895Juvenile bud stage 20.567
SRR8316896Juvenile bud stage 20.393
SRR8316897Juvenile bud stage 9.807
SRR8316894Third green stage 9.025
SRR8316900Third green stage 22.360
SRR8316901Third green stage 26.156
SRR8316898Complete white stage 10.956
SRR8316899Complete white stage 40.341
SRR8316903Complete white stage 19.970
SRR8316902Silver flowering stage12.328
SRR8316904Silver flowering stage15.775
SRR8316905Silver flowering stage8.793
SRR8316906Gold flowering stage 31.768
SRR8316907Gold flowering stage 22.309
SRR8316908Gold flowering stage 26.444
SRP132670SRR6706286Control31.533
SRR6706287Light intensity 50%30.712
SRR6706288Light intensity 20%31.485
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.500
CNS0095593Slightly white alabastrum(diploid) 222.625
CNS0095594Slightly white alabastrum(diploid) 314.849
CNS0095595Whole white alabastrum(diploid) 217.531
CNS0095596Whole white alabastrum(diploid) 314.789
CNS0095597Whole white alabastrum(diploid) 412.940
CNS0095598Silvery flower (diploied) 121.501
CNS0095599Silvery flower (diploied) 216.759
CNS0095600Silvery flower (diploied) 323.915
CNS0095601Golden flower (diploid) 116.145
CNS0095602Golden flower (diploid) 219.974
CNS0095603Golden flower (diploid) 320.300
CNS0095604Slightly white alabastrum(tetraploid) 122.417
CNS0095605Slightly white alabastrum(tetraploid) 219.876
CNS0095606Slightly white alabastrum(tetraploid) 334.554
CNS0095607Whole white alabastrum(tetraploid) 112.929
CNS0095608Whole white alabastrum(tetraploid) 212.462
CNS0095609Whole white alabastrum(tetraploid) 324.284
CNS0095610Silvery flower (tetraploid) 125.782
CNS0095611Silvery flower (tetraploid) 224.462
CNS0095612Silvery flower (tetraploid) 320.414
CNS0095613Golden flower (tetraploid) 120.557
CNS0095614Golden flower (tetraploid) 225.593
CNS0095615Golden flower (tetraploid) 324.331
CRA001975CRR073297Stem 132.513
CRR073298Stem 225.773
CRR073299Stem 329.398
CRR073300Leaf 129.010
CRR073301Leaf 233.804
CRR073302Leaf 333.913
CRR073303Juvenile bud 139.416
CRR073304Juvenile bud 223.010
CRR073305Juvenile bud 339.153
CRR073306Third green 18.492
CRR073307Third green 210.838
CRR073308Third green 310.572
CRR073309Second white 113.087
CRR073310Second white 218.137
CRR073311Second white 39.480
CRR073312Silver flowering 110.563
CRR073313Silver flowering 215.609
CRR073314Silver flowering 37.439
CRR073315Gold flowering 124.233
CRR073316Gold flowering 225.027
CRR073317Gold flowering 314.102
CRR073318Tawny withering 136.628
CRR073319Tawny withering 229.533
CRR073320Tawny withering 340.032