Gene detail

Detail information of GWHGAAZE013115

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007027063.1	3.10187E-55	Uncharacterized protein isoform 1 [Theobroma cacao]
trEMBL	tr\|A0A061ER96\|A0A061ER96_THECC	1E-55	Uncharacterized protein isoform 1 {ECO:0000313\|EMBL:EOY07565.1}
TAIR10	AT5G02520.1	5E-25	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	97024066	97030118	+
GWHAAZE00000003	mRNA	97024066	97030118	+
GWHAAZE00000003	exon	97024066	97024134	+
GWHAAZE00000003	exon	97024226	97024311	+
GWHAAZE00000003	exon	97025486	97025633	+
GWHAAZE00000003	exon	97025978	97026074	+
GWHAAZE00000003	exon	97026223	97026266	+
GWHAAZE00000003	exon	97026467	97026611	+
GWHAAZE00000003	exon	97027256	97027734	+
GWHAAZE00000003	exon	97028370	97028460	+
GWHAAZE00000003	exon	97028743	97028801	+
GWHAAZE00000003	exon	97030047	97030118	+
GWHAAZE00000003	CDS	97024066	97024134	+
GWHAAZE00000003	CDS	97024226	97024311	+
GWHAAZE00000003	CDS	97025486	97025633	+
GWHAAZE00000003	CDS	97025978	97026074	+
GWHAAZE00000003	CDS	97026223	97026266	+
GWHAAZE00000003	CDS	97026467	97026611	+
GWHAAZE00000003	CDS	97027256	97027734	+
GWHAAZE00000003	CDS	97028370	97028460	+
GWHAAZE00000003	CDS	97028743	97028801	+
GWHAAZE00000003	CDS	97030047	97030118	+

Transcript Sequence
>GWHTAAZE013129 ATGGCCTCTGCTTCCACCCATAATGAAAGCTGCTATAAGATCACTTCTTCACCTGGTTTCAAGAAAACAATTTTCTTGGAAGATTGGTGGCTCATTAAGGCTGAAAAGGACATTGAAGGGATGAGACTTGCTGTTGCAGGGTTCACATGTAGAGATACTCATCAACCTCGACGATTATTCTCCTCTGCACCAATTCTGAAGATTCATGACGTCTTCACCCTAGAGACCACTGATGGGATATGTGTTATACTTGAAGGCTTCATAAACAAGGCTCACACTAAAGAAAATGGCTTTATCTCTGATGTTTTCGATTATTTTGTTTTTGGCTTTCCTCCTTATTGGGTGGAATATGCTGAAAAGTGCATGGGTGAAGGATTTGCGAACAATGCTGTTTCAACGGGTGCGAGCACAAGCCCACAAGTTTATGAGATGGCTGCCGAGAAAGAACTTGGGGTTTATTTCGAATTTGGTGTCTCTACAGTTGACGTTGAAGGAACAAATAAAAATGTTGAAACTTCTAACACTTCAGAGCTTCCTGAAAATTTTCTCGACAGTACCCCGAGGCAACCCATAGATGATATGGCAACAGGTTTAACTACAGGGCTATCGGGGTTAGAAGGAAAAGCCGTTACTCCATCCATCGTGGCTACATATAGCAATATTACTCCAAAAAAGGAGAGTAGAAGACAATCTAAAAGAAACCATAAATTGAAGAGTTCGAGTGGCCATATGAAAGAGAATGCTGCATCTAATTGTAATATTGTGGAGAACAATTCTGCTTTAGAGGACTTGGAGAAAGAGAATTTGAACAACAAATCATCAATCTCGCCTGTTGGGTTTGGGAAGGAAAAGGTCATCTCTGAGAAAATTTCAAGTCATTCGAGTCCATTTGATGCTGGACTTCAAGATCCCATGGATGAAATAACAGTGATCAATCCTGATACTGAGCAGAGTACTAAGTCATCTGGTGGAGCTAATGGAAAAAAGGATAAAAACTGTGAACAAAAAGCAAGCATCTCTGAAGAAGCAAGCACAACTAGGAAGAAGACTAAAAGGAAACTCAAATATGGAAGTCCTGCGGCTCCAGTCACCCGGAGAGGAACAGAAAGAGCATCTATTCTCTCTCCAGAATCCTTGAGTTCCAAAAGATCTAGATCAGGGAGATTACTTCTACCTACCTTAGAATTCTGGCGCAACCAAACGGTGATATACGATGAGGATCGTCGGGTTACTGGAATTAAACAAGACCTTCCTGCAGTGCAATCATCTAGAGGTTTGTTCCCTTACTGA

Network for GWHGAAZE013115

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF09133.11	SANTA	24	117	2.40E-23

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.110
	SRR3591706	second leaf	16.282
	SRR3591707	mature leaf	12.114
	SRR3591708	Shoot apex	23.351
	SRR3591709	Stem	19.712
	SRR3591710	White floral bud	18.444
	SRR3591711	White flower	17.011
	SRR3591712	Green floral bud	18.967
	SRR3591713	Yellow flower	19.030
SRP173429	SRR8316895	Juvenile bud stage	16.396
	SRR8316896	Juvenile bud stage	24.075
	SRR8316897	Juvenile bud stage	16.138
	SRR8316894	Third green stage	9.645
	SRR8316900	Third green stage	21.157
	SRR8316901	Third green stage	22.131
	SRR8316898	Complete white stage	7.229
	SRR8316899	Complete white stage	26.478
	SRR8316903	Complete white stage	16.591
	SRR8316902	Silver flowering stage	8.106
	SRR8316904	Silver flowering stage	12.519
	SRR8316905	Silver flowering stage	4.413
	SRR8316906	Gold flowering stage	17.060
	SRR8316907	Gold flowering stage	18.025
	SRR8316908	Gold flowering stage	22.233
SRP132670	SRR6706286	Control	13.922
	SRR6706287	Light intensity 50%	14.085
	SRR6706288	Light intensity 20%	15.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.277
	CNS0095593	Slightly white alabastrum(diploid) 2	10.891
	CNS0095594	Slightly white alabastrum(diploid) 3	10.623
	CNS0095595	Whole white alabastrum(diploid) 2	9.093
	CNS0095596	Whole white alabastrum(diploid) 3	8.602
	CNS0095597	Whole white alabastrum(diploid) 4	10.900
	CNS0095598	Silvery flower (diploied) 1	18.498
	CNS0095599	Silvery flower (diploied) 2	12.619
	CNS0095600	Silvery flower (diploied) 3	10.136
	CNS0095601	Golden flower (diploid) 1	14.577
	CNS0095602	Golden flower (diploid) 2	12.839
	CNS0095603	Golden flower (diploid) 3	13.326
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.418
	CNS0095605	Slightly white alabastrum(tetraploid) 2	12.785
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.657
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.287
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.752
	CNS0095609	Whole white alabastrum(tetraploid) 3	16.270
	CNS0095610	Silvery flower (tetraploid) 1	21.988
	CNS0095611	Silvery flower (tetraploid) 2	14.951
	CNS0095612	Silvery flower (tetraploid) 3	14.625
	CNS0095613	Golden flower (tetraploid) 1	11.886
	CNS0095614	Golden flower (tetraploid) 2	17.169
	CNS0095615	Golden flower (tetraploid) 3	12.819
CRA001975	CRR073297	Stem 1	13.353
	CRR073298	Stem 2	10.412
	CRR073299	Stem 3	3.920
	CRR073300	Leaf 1	13.557
	CRR073301	Leaf 2	10.409
	CRR073302	Leaf 3	5.961
	CRR073303	Juvenile bud 1	4.974
	CRR073304	Juvenile bud 2	3.928
	CRR073305	Juvenile bud 3	6.340
	CRR073306	Third green 1	0.160
	CRR073307	Third green 2	0.410
	CRR073308	Third green 3	0.697
	CRR073309	Second white 1	0.107
	CRR073310	Second white 2	0.880
	CRR073311	Second white 3	0.710
	CRR073312	Silver flowering 1	0.566
	CRR073313	Silver flowering 2	0.559
	CRR073314	Silver flowering 3	0.376
	CRR073315	Gold flowering 1	2.844
	CRR073316	Gold flowering 2	4.485
	CRR073317	Gold flowering 3	1.692
	CRR073318	Tawny withering 1	4.587
	CRR073319	Tawny withering 2	5.947
	CRR073320	Tawny withering 3	4.583