Gene detail

Detail information of GWHGAAZE013103

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002270444.1	0	PREDICTED: kinesin-like protein KIF22 isoform X2 [Vitis vinifera]
Swissprot	tr\|P82266\|K125_ARATH	1E-47	Probable 125 kDa kinesin-related protein
trEMBL	tr\|D7THP0\|D7THP0_VITVI	0	Kinesin-like protein {ECO:0000256\|RuleBase:RU000394}
TAIR10	AT5G02370.1	4E-152	ATP binding microtubule motor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96809143	96815558	+
GWHAAZE00000003	mRNA	96809143	96815558	+
GWHAAZE00000003	exon	96809143	96809522	+
GWHAAZE00000003	exon	96810815	96810983	+
GWHAAZE00000003	exon	96811254	96811647	+
GWHAAZE00000003	exon	96812492	96812697	+
GWHAAZE00000003	exon	96813213	96813526	+
GWHAAZE00000003	exon	96813613	96813676	+
GWHAAZE00000003	exon	96813777	96813858	+
GWHAAZE00000003	exon	96813968	96814263	+
GWHAAZE00000003	exon	96814369	96814415	+
GWHAAZE00000003	exon	96814524	96814545	+
GWHAAZE00000003	exon	96814871	96814933	+
GWHAAZE00000003	exon	96815033	96815084	+
GWHAAZE00000003	exon	96815497	96815558	+
GWHAAZE00000003	CDS	96809143	96809522	+
GWHAAZE00000003	CDS	96810815	96810983	+
GWHAAZE00000003	CDS	96811254	96811647	+
GWHAAZE00000003	CDS	96812492	96812697	+
GWHAAZE00000003	CDS	96813213	96813526	+
GWHAAZE00000003	CDS	96813613	96813676	+
GWHAAZE00000003	CDS	96813777	96813858	+
GWHAAZE00000003	CDS	96813968	96814263	+
GWHAAZE00000003	CDS	96814369	96814415	+
GWHAAZE00000003	CDS	96814524	96814545	+
GWHAAZE00000003	CDS	96814871	96814933	+
GWHAAZE00000003	CDS	96815033	96815084	+
GWHAAZE00000003	CDS	96815497	96815558	+

Transcript Sequence
>GWHTAAZE013117 ATGCTGTTCTATCATTTTCTCTTCAACCCACAACTCTCTCTCTCTCTCTCTCTGCTGTTCCGTAAAATCACCTCACTTAAAACATTTTTATTTTTTAAAAAAATTCTGCAGCTGGAAGTAAGTCAACTAATGGCTACTCAACAAGTGAATCAGCTAGATACACCCCAAAGAGATTACTACACTACCCCTGCCAAACACTCAACAAAGTCGTCTTCTTCCATCTCATCAATGGTGAGGGTAATCGTAAGAGTTCGTCCCTTTCTCCCCTACGAGACAAATGGAAGAAACCCTACCCCCTGTGTTTCTCTTCTCAATAACTCACAGTTTGATCCCAACGTAGAAGATGAAGTCACTGTTCATCTTAAAGATCAAGGAACTAGTCGAAACGAATGTTACAAGTTGGATTCATTTTTTGGGCAAGAAGACAACAACGTGAACCAAATTTTCCAAAAAGAAGTAAGCCCCCTGATTCCTGGAATATTTTATGGGTGCAATGCCACGGTTTTCGCTTATGGGGCTACTGGCAGTGGGAAAACCTACACAATGCAGGGGAGTAAGGATTTGCCAGGTCTAATGCCACTCGCAATGTCAACAATTCTTTCTATGTGCGAGAGGACAGGCAGTGGCACAGAAATTTCGTACTATGAGGTCTATATGGACAGGTGTTACGATCTACTTGAACTCAAACCAAAAGAAATAGCTGTGTTAGATGACAAAGACGGGCAAATTCACCTAAAGGGACTTTCTCGGGTTCCAGTCAATTCAATGTCCGAGTTTCATGAGGCAATTTCTTGTGCAATTCAAAGGCGAAAGGTTGCACATACGGGCCTCAACGACGTCTCAAGTAGGAGCCATGGGGTGCTTGTGATTGCTATTTCCACACCTTGTGCTGATGGTTCCTCTAACGTTATATCTGGGAAGCTGAACCTCATAGACTTAGCAGGTAATGAAGATAACAGAAGGACTTGCAATGAAGATATTCGCCTACAAGAGAGTGCTAAAATCAACCGGTCCCTATTTGCCTTGTCAAATGTGATTTCTGCACTGAACAACAATATGCCTCGAGTGCCTTATAGAGAAAGCAAATTGACCCGGATATTGCAGGATTCTCTAGGAGGAATGAGTCGGGCTTTAATGGTAGCTTGTCTGAATCCAGGAGAGTATCAAGAATCGGTTTATACAGTTAGCTTAGCAGCCCGGTCCCGCCACATCACTAATTTCATACCTTCATCTCAAAAACAAGACACGCCAAAGCTCAAAGTTGATATGGAGGGAAAGCTTCACGCGTGGCTTGAATCTAAGGGAAAGACAAAGAGCACTCATAAAACCTGTGCCTTACGTTCTCCGTTTCTCAGTAGAACACCTAATAGTTCTATAAAAAGCTTTACGAAGAAACCCGATTGGCAAATATCCACAAAAACAAAGGTGGTCAAGAATCAAGCTCCTTTGATTTCCAAAGAAAGTACTCAGAATGAGTCTGGCAACAATTCATTCAACAATGGAGGTCTAGTTGATCCTGTTATGAAGAATGTAATCCTAGTTGACGAGGAAAGGAAAAAAGAAGAGTTCAAGGCTCCTCTTGACCCAACTGAAATCGAATCAAAAACAGATGGACCGGTGGACAACTGGGGGAATATGATGACACCTATCAAATACACGGATGCAATTGCATTGCCCATTAAAGAAAAAACCAAAGCGCTTCAAATTTCATTGAGGAAAGTCCTCTCTCCCATCGATTCCAACATAAACATTGAGAATATGTCATCAAAAGACCAAATATGTCTAGTTTTTTTGGATCCAAACACTCCCAAGACACCTTTTGTTCTTAAGAATGCGGATAACACCACTTTCCAAAATTTCGATACTCCACTGGATAAGTTCACCATACAGAGTTCTCATTTGAAGAGCTCTCTTCTTCAAGAATATATTGAGTTTTTGAATACAGCTAGCAAGGAGGAGCTACTGGGGTTAAAGGGGATCGGACAGAAGATGGCTGAGTACATACTTGAACTAAGGAAGACAAGCCCGCTAAAATCGCTAAATGATTTGGAGAAGATAGGCCTTTCATCAAAACAGGTAACGGAATTAATTGTTGTCTCCGGACAGGTACATAATATGTTTGGGAGAAGTGCAAAAGGAATATTTGATTGA

Network for GWHGAAZE013103

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00225.24	Kinesin	83	404	3.50E-84
PF12836.8	HHH_3	646	690	3.30E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10403	KIF22	Progesterone-mediated oocyte maturation	map04914

Gene Ontology

GO term	Ontology	Name
GO:0007018	biological_process	microtubule-based movement
GO:0003777	molecular_function	microtubule motor activity
GO:0005524	molecular_function	ATP binding
GO:0008017	molecular_function	microtubule binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.026
	SRR3591706	second leaf	4.467
	SRR3591707	mature leaf	0.062
	SRR3591708	Shoot apex	30.939
	SRR3591709	Stem	3.796
	SRR3591710	White floral bud	1.778
	SRR3591711	White flower	0.393
	SRR3591712	Green floral bud	0.912
	SRR3591713	Yellow flower	0.287
SRP173429	SRR8316895	Juvenile bud stage	4.266
	SRR8316896	Juvenile bud stage	4.586
	SRR8316897	Juvenile bud stage	2.305
	SRR8316894	Third green stage	1.198
	SRR8316900	Third green stage	0.961
	SRR8316901	Third green stage	0.809
	SRR8316898	Complete white stage	0.944
	SRR8316899	Complete white stage	0.676
	SRR8316903	Complete white stage	2.080
	SRR8316902	Silver flowering stage	0.401
	SRR8316904	Silver flowering stage	0.559
	SRR8316905	Silver flowering stage	0.433
	SRR8316906	Gold flowering stage	0.926
	SRR8316907	Gold flowering stage	0.490
	SRR8316908	Gold flowering stage	1.136
SRP132670	SRR6706286	Control	0.714
	SRR6706287	Light intensity 50%	0.897
	SRR6706288	Light intensity 20%	0.893
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.671
	CNS0095593	Slightly white alabastrum(diploid) 2	1.080
	CNS0095594	Slightly white alabastrum(diploid) 3	1.328
	CNS0095595	Whole white alabastrum(diploid) 2	0.780
	CNS0095596	Whole white alabastrum(diploid) 3	0.279
	CNS0095597	Whole white alabastrum(diploid) 4	0.801
	CNS0095598	Silvery flower (diploied) 1	2.250
	CNS0095599	Silvery flower (diploied) 2	1.552
	CNS0095600	Silvery flower (diploied) 3	0.956
	CNS0095601	Golden flower (diploid) 1	1.082
	CNS0095602	Golden flower (diploid) 2	1.169
	CNS0095603	Golden flower (diploid) 3	0.788
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.128
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.754
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.377
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.075
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.081
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.449
	CNS0095610	Silvery flower (tetraploid) 1	0.094
	CNS0095611	Silvery flower (tetraploid) 2	0.214
	CNS0095612	Silvery flower (tetraploid) 3	0.238
	CNS0095613	Golden flower (tetraploid) 1	0.060
	CNS0095614	Golden flower (tetraploid) 2	0.132
	CNS0095615	Golden flower (tetraploid) 3	0.189
CRA001975	CRR073297	Stem 1	2.157
	CRR073298	Stem 2	2.388
	CRR073299	Stem 3	2.021
	CRR073300	Leaf 1	0.709
	CRR073301	Leaf 2	0.762
	CRR073302	Leaf 3	0.460
	CRR073303	Juvenile bud 1	0.300
	CRR073304	Juvenile bud 2	0.091
	CRR073305	Juvenile bud 3	0.161
	CRR073306	Third green 1	0.244
	CRR073307	Third green 2	0.248
	CRR073308	Third green 3	0.201
	CRR073309	Second white 1	0.058
	CRR073310	Second white 2	0.210
	CRR073311	Second white 3	0.046
	CRR073312	Silver flowering 1	0.369
	CRR073313	Silver flowering 2	0.356
	CRR073314	Silver flowering 3	0.161
	CRR073315	Gold flowering 1	0.110
	CRR073316	Gold flowering 2	0.238
	CRR073317	Gold flowering 3	0.020
	CRR073318	Tawny withering 1	2.447
	CRR073319	Tawny withering 2	1.110
	CRR073320	Tawny withering 3	3.166