Gene detail

Detail information of GWHGAAZE013100

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_004249535.1	0	PREDICTED: probable serine/threonine-protein kinase NAK [Solanum lycopersicum]
Swissprot	tr\|Q06548\|APK1A_ARATH	0	Protein kinase APK1A, chloroplastic (Precursor)
trEMBL	tr\|K4D3R1\|K4D3R1_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc10g084770.1.1}
TAIR10	AT2G28930.2	1E-154	protein kinase 1B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000003	gene	96713128	96716368	-
GWHAAZE00000003	mRNA	96713128	96716368	-
GWHAAZE00000003	exon	96713128	96713579	-
GWHAAZE00000003	exon	96713964	96714087	-
GWHAAZE00000003	exon	96714203	96714345	-
GWHAAZE00000003	exon	96714791	96714926	-
GWHAAZE00000003	exon	96716036	96716368	-
GWHAAZE00000003	CDS	96716036	96716368	-
GWHAAZE00000003	CDS	96714791	96714926	-
GWHAAZE00000003	CDS	96714203	96714345	-
GWHAAZE00000003	CDS	96713964	96714087	-
GWHAAZE00000003	CDS	96713128	96713579	-

Transcript Sequence
>GWHTAAZE013114 ATGTGTGTAGGTGAGGATTCTAAAACTGTTAGCAGAGATGGGAATGGAAATAGCAATTTGAGCAAGTCCTCGTCAACTTCTGTACCCCCAACTCCTAGAAGCGAGGGGGAGATTTTGCAGTCCTCAAATTTAAAGAGCTTCACCTTCAACGAGCTCAAATCCTCCACCAGAAACTTCCGTCCTGATAGTGTATTAGGTGAAGGCGGCTTTGGCTCTGTTTTCAAAGGGTGGGTGGATGAGCACTCACTTACGGCTTCGAGACCTGGGTCTGGGATAGTGATAGCAGTGAAAAAGTTGAACCAAGAAGGGTTTCAAGGGCACAAGGAATGGCTGGCAGAAATTAACTATCTTGGGCAGCTTCGCCATCCTAATCTTGTTAAGTTAATTGGTTACTGCTTAGAGGATGACCACAGGCTTTTAGTATATGAGTTCATGCCTAAGGGTAGCATGGAGAATCATTTATTCAGGAGAGGATCTTTCTTCCAACCCCTTTCGTGGGGCCTACGTATGAAAGTTGCCCTTGGTGCCGCAAGGGGACTTGCCTTTCTTCACGGGGCCGAAACAATGGTCATATATAGGGATTTCAAGACTTCTAATATTCTGCTTGACTCGAACTTCAATGCAAAACTCTCTGATTTTGGATTGGCGAGGGATGGTCCAACGGGTGATAAGAGCCATGTCTCTACTAGGGTTATGGGCACCTACGGATATGCTGCTCCTGAGTATCTCTCAACAGGTCATTTAACCGCAAAGAGTGATGTGTACAGCTTCGGGGTAGTTCTCCTCGAAATTTTGTCTGGGAAAAAGGCCATAGACAAGAACCGGCCAATGGGTGAACACAGCCTAGTGGATTGGGCAAAGCCTTGTTTGAGCAACAAACGGAGAATATTCCGTGTTCTTGATGCCCGTCTCGAGGGCCAATATTCACTTGAACGCGCCCTAAAAGTGGCTAATATTGCACTCCAATGCCTTTGCATGGAGCCCAAGCTAAGGCCGAGCATGGACAAGGTGGTGACAGCATTGGAAGAACTTCAAGACCCGAAGGAGGTCTCCAAAAATGATCAAAAAGACCAGCCGATGGATCAGCACAGCCGTGTTAATGGACAGCTGGGATTGTGCTGGAGCGAAGCTCCGGTGCAACCTGCGGGGGCTTATCCTAGACCTTCAGCTTCCCTTGCTTATGCTTAG

Network for GWHGAAZE013100

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	63	341	1.80E-45

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.460
	SRR3591706	second leaf	12.323
	SRR3591707	mature leaf	15.700
	SRR3591708	Shoot apex	13.224
	SRR3591709	Stem	11.309
	SRR3591710	White floral bud	10.190
	SRR3591711	White flower	8.475
	SRR3591712	Green floral bud	8.764
	SRR3591713	Yellow flower	2.325
SRP173429	SRR8316895	Juvenile bud stage	8.928
	SRR8316896	Juvenile bud stage	9.662
	SRR8316897	Juvenile bud stage	5.327
	SRR8316894	Third green stage	4.282
	SRR8316900	Third green stage	11.243
	SRR8316901	Third green stage	11.809
	SRR8316898	Complete white stage	3.430
	SRR8316899	Complete white stage	19.017
	SRR8316903	Complete white stage	6.328
	SRR8316902	Silver flowering stage	2.932
	SRR8316904	Silver flowering stage	4.090
	SRR8316905	Silver flowering stage	1.541
	SRR8316906	Gold flowering stage	8.489
	SRR8316907	Gold flowering stage	8.724
	SRR8316908	Gold flowering stage	8.311
SRP132670	SRR6706286	Control	16.275
	SRR6706287	Light intensity 50%	14.701
	SRR6706288	Light intensity 20%	13.853
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.955
	CNS0095593	Slightly white alabastrum(diploid) 2	7.664
	CNS0095594	Slightly white alabastrum(diploid) 3	7.291
	CNS0095595	Whole white alabastrum(diploid) 2	7.615
	CNS0095596	Whole white alabastrum(diploid) 3	6.005
	CNS0095597	Whole white alabastrum(diploid) 4	7.108
	CNS0095598	Silvery flower (diploied) 1	16.837
	CNS0095599	Silvery flower (diploied) 2	12.728
	CNS0095600	Silvery flower (diploied) 3	6.186
	CNS0095601	Golden flower (diploid) 1	14.040
	CNS0095602	Golden flower (diploid) 2	11.495
	CNS0095603	Golden flower (diploid) 3	9.978
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.643
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.362
	CNS0095606	Slightly white alabastrum(tetraploid) 3	21.649
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.007
	CNS0095608	Whole white alabastrum(tetraploid) 2	4.532
	CNS0095609	Whole white alabastrum(tetraploid) 3	11.593
	CNS0095610	Silvery flower (tetraploid) 1	8.910
	CNS0095611	Silvery flower (tetraploid) 2	11.325
	CNS0095612	Silvery flower (tetraploid) 3	9.370
	CNS0095613	Golden flower (tetraploid) 1	3.749
	CNS0095614	Golden flower (tetraploid) 2	6.919
	CNS0095615	Golden flower (tetraploid) 3	2.901
CRA001975	CRR073297	Stem 1	11.744
	CRR073298	Stem 2	11.361
	CRR073299	Stem 3	11.085
	CRR073300	Leaf 1	11.736
	CRR073301	Leaf 2	12.201
	CRR073302	Leaf 3	10.739
	CRR073303	Juvenile bud 1	12.397
	CRR073304	Juvenile bud 2	8.969
	CRR073305	Juvenile bud 3	10.280
	CRR073306	Third green 1	4.540
	CRR073307	Third green 2	2.692
	CRR073308	Third green 3	3.414
	CRR073309	Second white 1	3.754
	CRR073310	Second white 2	2.785
	CRR073311	Second white 3	2.910
	CRR073312	Silver flowering 1	1.965
	CRR073313	Silver flowering 2	1.642
	CRR073314	Silver flowering 3	1.241
	CRR073315	Gold flowering 1	10.076
	CRR073316	Gold flowering 2	12.632
	CRR073317	Gold flowering 3	7.015
	CRR073318	Tawny withering 1	12.485
	CRR073319	Tawny withering 2	14.648
	CRR073320	Tawny withering 3	6.182