Detail information of GWHGAAZE013095


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009758867.10PREDICTED: scarecrow-like protein 9 [Nicotiana sylvestris]
Swissprottr|O80933|SCL9_ARATH0Scarecrow-like protein 9
trEMBLtr|M5W3W5|M5W3W5_PRUPE0Uncharacterized protein {ECO:0000313|EMBL:EMJ08414.1}
TAIR10AT2G37650.12E-167GRAS family transcription factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000003gene9665039696652360-
GWHAAZE00000003mRNA9665039696652360-
GWHAAZE00000003exon9665184796652360-
GWHAAZE00000003exon9665039696651771-
GWHAAZE00000003CDS9665184796652360-
GWHAAZE00000003CDS9665039696651771-
Transcript Sequence

Network for GWHGAAZE013095

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.15GRAS2566273.40E-113
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.182
SRR3591706second leaf3.562
SRR3591707mature leaf5.146
SRR3591708Shoot apex5.328
SRR3591709Stem5.388
SRR3591710White floral bud4.882
SRR3591711White flower6.771
SRR3591712Green floral bud5.302
SRR3591713Yellow flower4.664
SRP173429 SRR8316895Juvenile bud stage 3.170
SRR8316896Juvenile bud stage 2.885
SRR8316897Juvenile bud stage 1.127
SRR8316894Third green stage 1.381
SRR8316900Third green stage 3.346
SRR8316901Third green stage 3.390
SRR8316898Complete white stage 1.714
SRR8316899Complete white stage 7.799
SRR8316903Complete white stage 2.780
SRR8316902Silver flowering stage1.914
SRR8316904Silver flowering stage2.606
SRR8316905Silver flowering stage1.219
SRR8316906Gold flowering stage 3.819
SRR8316907Gold flowering stage 3.367
SRR8316908Gold flowering stage 4.540
SRP132670SRR6706286Control2.495
SRR6706287Light intensity 50%2.748
SRR6706288Light intensity 20%3.352
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.899
CNS0095593Slightly white alabastrum(diploid) 22.240
CNS0095594Slightly white alabastrum(diploid) 31.929
CNS0095595Whole white alabastrum(diploid) 21.716
CNS0095596Whole white alabastrum(diploid) 31.257
CNS0095597Whole white alabastrum(diploid) 41.704
CNS0095598Silvery flower (diploied) 13.370
CNS0095599Silvery flower (diploied) 22.311
CNS0095600Silvery flower (diploied) 34.240
CNS0095601Golden flower (diploid) 13.057
CNS0095602Golden flower (diploid) 24.233
CNS0095603Golden flower (diploid) 35.236
CNS0095604Slightly white alabastrum(tetraploid) 12.795
CNS0095605Slightly white alabastrum(tetraploid) 22.787
CNS0095606Slightly white alabastrum(tetraploid) 37.338
CNS0095607Whole white alabastrum(tetraploid) 11.646
CNS0095608Whole white alabastrum(tetraploid) 20.998
CNS0095609Whole white alabastrum(tetraploid) 32.083
CNS0095610Silvery flower (tetraploid) 14.424
CNS0095611Silvery flower (tetraploid) 24.536
CNS0095612Silvery flower (tetraploid) 33.562
CNS0095613Golden flower (tetraploid) 12.219
CNS0095614Golden flower (tetraploid) 23.896
CNS0095615Golden flower (tetraploid) 33.083
CRA001975CRR073297Stem 13.923
CRR073298Stem 24.119
CRR073299Stem 33.998
CRR073300Leaf 13.533
CRR073301Leaf 24.716
CRR073302Leaf 33.295
CRR073303Juvenile bud 13.144
CRR073304Juvenile bud 23.188
CRR073305Juvenile bud 36.004
CRR073306Third green 11.766
CRR073307Third green 20.796
CRR073308Third green 31.980
CRR073309Second white 11.688
CRR073310Second white 22.428
CRR073311Second white 31.971
CRR073312Silver flowering 11.667
CRR073313Silver flowering 22.435
CRR073314Silver flowering 31.202
CRR073315Gold flowering 11.615
CRR073316Gold flowering 23.132
CRR073317Gold flowering 32.741
CRR073318Tawny withering 13.192
CRR073319Tawny withering 22.208
CRR073320Tawny withering 34.031